Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   SPN23F_RS13995 Genome accession   NC_011900
Coordinates   1886472..1887293 (-) Length   273 a.a.
NCBI ID   WP_001826799.1    Uniprot ID   -
Organism   Streptococcus pneumoniae ATCC 700669     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1881472..1892293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN23F_RS09865 (SPN23F19350) - 1882016..1882333 (-) 318 WP_000615767.1 thioredoxin family protein -
  SPN23F_RS09870 (SPN23F19360) - 1882330..1882629 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  SPN23F_RS13985 - 1882827..1882907 (-) 81 WP_223200442.1 hypothetical protein -
  SPN23F_RS09875 - 1882914..1883105 (-) 192 WP_000291826.1 cell wall-binding protein -
  SPN23F_RS09880 (SPN23F19380) - 1883266..1883940 (-) 675 WP_000725749.1 LiaF transmembrane domain-containing protein -
  SPN23F_RS09885 (SPN23F19390) - 1883946..1884392 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  SPN23F_RS09890 (SPN23F19400) - 1884506..1885009 (-) 504 WP_000800947.1 phosphatase PAP2 family protein -
  SPN23F_RS09895 (SPN23F19410) - 1885006..1885368 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  SPN23F_RS13990 (SPN23F19420) - 1885434..1886465 (-) 1032 Protein_1884 ATP-binding cassette domain-containing protein -
  SPN23F_RS13995 (SPN23F19440) rcrP 1886472..1887293 (-) 822 WP_001826799.1 ABC transporter permease Regulator
  SPN23F_RS09915 (SPN23F19450) - 1887309..1887780 (-) 472 Protein_1886 MarR family winged helix-turn-helix transcriptional regulator -
  SPN23F_RS09920 (SPN23F19460) - 1887904..1888620 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SPN23F_RS09925 (SPN23F19470) ply 1889503..1890918 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  SPN23F_RS09930 (SPN23F19480) - 1890929..1891339 (-) 411 WP_000595762.1 hypothetical protein -
  SPN23F_RS09935 (SPN23F19490) - 1891332..1891940 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30572.17 Da        Isoelectric Point: 5.9257

>NTDB_id=32731 SPN23F_RS13995 WP_001826799.1 1886472..1887293(-) (rcrP) [Streptococcus pneumoniae ATCC 700669]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMLFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLDFPKQSLIQGLIDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=32731 SPN23F_RS13995 WP_001826799.1 1886472..1887293(-) (rcrP) [Streptococcus pneumoniae ATCC 700669]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCTCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATTTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTTTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGACTTTCCAAAACAGTCCTTGATTCAGGGGCTGATAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.842

100

0.593


Multiple sequence alignment