Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EG350_RS15565 Genome accession   NZ_CP033914
Coordinates   3510328..3510981 (+) Length   217 a.a.
NCBI ID   WP_123852448.1    Uniprot ID   A0A3G6MS02
Organism   Chryseobacterium shandongense strain G0239     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3505328..3515981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG350_RS15535 (EG350_15685) aqpZ 3505827..3506543 (+) 717 WP_123853030.1 aquaporin Z -
  EG350_RS15540 (EG350_15690) - 3506618..3507163 (-) 546 WP_066433454.1 hypothetical protein -
  EG350_RS15545 (EG350_15695) - 3507317..3508297 (-) 981 WP_066433451.1 acyl transferase -
  EG350_RS15550 (EG350_15700) - 3508472..3509263 (-) 792 WP_066433450.1 UDP-2,3-diacylglucosamine diphosphatase -
  EG350_RS15555 (EG350_15705) - 3509287..3509733 (-) 447 WP_066433447.1 6-carboxytetrahydropterin synthase -
  EG350_RS15560 (EG350_15710) - 3509814..3510197 (-) 384 WP_123852447.1 thioesterase family protein -
  EG350_RS15565 (EG350_15715) comF 3510328..3510981 (+) 654 WP_123852448.1 ComF family protein Machinery gene
  EG350_RS15570 (EG350_15720) - 3511083..3511772 (+) 690 WP_123852449.1 alpha/beta fold hydrolase -
  EG350_RS15575 (EG350_15725) upp 3511761..3512414 (-) 654 WP_123852450.1 uracil phosphoribosyltransferase -
  EG350_RS15580 (EG350_15730) der 3512492..3513802 (-) 1311 WP_066433428.1 ribosome biogenesis GTPase Der -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25223.33 Da        Isoelectric Point: 8.3427

>NTDB_id=327043 EG350_RS15565 WP_123852448.1 3510328..3510981(+) (comF) [Chryseobacterium shandongense strain G0239]
MIFDILFPNRCLGCHGIISADLLVCELCFSRIDFVHSGYFDNNFIKERCKLLFPVENTFALMQFEKENLSRKIIHELKYK
SREKAGEILAEWTMERLDFKDRKPDLLVSVPLHPKKLKERGYNQLHTFTEKLSEFYGIPFDHDLIKRNQYSKAQALKDKQ
NRLKSENVFSITKSITQKNILLIDDVFTTGNTIASIAWEILKAGNNTVNVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=327043 EG350_RS15565 WP_123852448.1 3510328..3510981(+) (comF) [Chryseobacterium shandongense strain G0239]
ATGATTTTTGATATTTTATTTCCTAACCGATGCCTGGGCTGCCATGGCATTATTTCGGCTGATCTTCTGGTCTGTGAATT
GTGTTTCAGCCGTATTGATTTCGTCCATTCCGGTTATTTTGACAATAATTTCATCAAAGAAAGATGCAAACTTCTTTTTC
CTGTTGAAAACACTTTTGCTTTGATGCAGTTTGAAAAAGAAAATCTCAGCAGGAAAATTATTCATGAATTAAAATACAAA
AGCCGGGAGAAGGCCGGAGAAATTTTGGCGGAGTGGACCATGGAGCGACTTGATTTCAAAGACCGAAAGCCTGATTTGCT
GGTTTCCGTCCCGCTTCATCCCAAAAAGCTTAAAGAAAGAGGATACAATCAACTGCACACATTTACTGAAAAGCTTTCTG
AGTTTTATGGAATTCCTTTTGACCATGATTTGATTAAAAGAAATCAGTATTCAAAAGCGCAGGCCCTAAAAGATAAACAG
AACCGTTTAAAATCAGAAAATGTATTTTCTATCACCAAAAGCATAACGCAAAAAAATATACTTCTTATTGATGACGTTTT
CACTACCGGAAATACGATTGCTTCTATCGCGTGGGAGATTCTTAAAGCGGGTAACAATACCGTTAATGTGCTGGTAATGG
CGATGGATGTGTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(3-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G6MS02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

50

99.539

0.498

Multiple sequence alignment