Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   EHF40_RS01585 Genome accession   NZ_CP033907
Coordinates   291124..291810 (+) Length   228 a.a.
NCBI ID   WP_002991052.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Duke-Large     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 286124..296810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF40_RS01560 (EHF40_01560) ktrB 286267..287643 (-) 1377 WP_032459855.1 potassium uptake transporter channel subunit KtrB -
  EHF40_RS01565 (EHF40_01565) rsmG 287727..288440 (-) 714 WP_011528267.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  EHF40_RS01570 (EHF40_01570) - 288590..289147 (+) 558 WP_002985956.1 LemA family protein -
  EHF40_RS01575 (EHF40_01575) htpX 289194..290090 (+) 897 WP_002985953.1 zinc metalloprotease HtpX -
  EHF40_RS01580 (EHF40_01580) - 290324..290857 (+) 534 WP_011054200.1 DUF177 domain-containing protein -
  EHF40_RS01585 (EHF40_01585) covR 291124..291810 (+) 687 WP_002991052.1 two-component system response regulator CovR Regulator
  EHF40_RS01590 (EHF40_01590) covS 291816..293329 (+) 1514 Protein_250 two-component system sensor histidine kinase CovS -
  EHF40_RS01595 (EHF40_01595) nrdR 293544..294038 (+) 495 WP_002985941.1 transcriptional regulator NrdR -
  EHF40_RS01600 (EHF40_01600) - 294022..295197 (+) 1176 WP_002991019.1 replication initiation and membrane attachment family protein -
  EHF40_RS01605 (EHF40_01605) dnaI 295198..296100 (+) 903 WP_011528269.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26618.70 Da        Isoelectric Point: 4.6586

>NTDB_id=326904 EHF40_RS01585 WP_002991052.1 291124..291810(+) (covR) [Streptococcus pyogenes strain Duke-Large]
MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=326904 EHF40_RS01585 WP_002991052.1 291124..291810(+) (covR) [Streptococcus pyogenes strain Duke-Large]
ATGACAAAGAAAATTTTAATTATTGAAGATGAAAAGAATCTGGCTAGATTCGTTTCTCTTGAGCTGCAACATGAGGGTTA
TGAAGTCATTGTTGAGGTCAATGGTCGCGAAGGGTTAGAAACTGCTTTGGAAAAAGAGTTTGATTTAATCCTGCTTGACT
TAATGTTACCAGAGATGGATGGTTTTGAAGTGACCCGTCGTTTGCAAACCGAAAAAACAACATATATCATGATGATGACT
GCGCGTGATTCTATTATGGATGTGGTTGCAGGTTTAGACCGCGGTGCAGACGACTATATTGTTAAACCGTTTGCCATTGA
AGAACTACTTGCCCGTATTCGTGCTATTTTCCGCCGTCAAGACATTGAATCTGAGAAGAAAGTGCCTAGTCAAGGCATTT
ATCGAGATCTAGTTTTAAATCCACAAAACCGTTCAGTTAATCGTGGCGACGATGAGATTTCTCTCACTAAACGTGAATAT
GATTTGCTTAATATTTTGATGACTAACATGAATCGTGTCATGACACGTGAAGAATTATTGTCAAATGTTTGGAAATATGA
TGAAGCCGTTGAGACTAATGTTGTAGATGTCTATATTCGTTATCTCCGCGGCAAAATTGACATTCCAGGCAAGGAATCTT
ATATCCAAACAGTGCGTGGCATGGGATACGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.966

100

0.447
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425

Multiple sequence alignment