Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FNK00_RS06425 Genome accession   NZ_CP041584
Coordinates   1236549..1237415 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1231549..1242415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNK00_RS06405 (FNK00_06405) metF 1233402..1234250 (+) 849 WP_002860436.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  FNK00_RS06410 (FNK00_06410) - 1234272..1234463 (-) 192 WP_002852856.1 membrane protein -
  FNK00_RS06415 (FNK00_06415) atpB 1234460..1235140 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  FNK00_RS06420 (FNK00_06420) radA 1235209..1236549 (-) 1341 WP_002859284.1 DNA repair protein RadA Machinery gene
  FNK00_RS06425 (FNK00_06425) pilA 1236549..1237415 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  FNK00_RS06430 (FNK00_06430) - 1237415..1237972 (-) 558 WP_002869638.1 TlpA disulfide reductase family protein -
  FNK00_RS06435 (FNK00_06435) - 1238055..1238681 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  FNK00_RS06440 (FNK00_06440) rny 1238602..1240155 (+) 1554 WP_002869639.1 ribonuclease Y -
  FNK00_RS06445 (FNK00_06445) - 1240164..1240721 (+) 558 WP_002852823.1 DedA family protein -
  FNK00_RS06450 (FNK00_06450) - 1240721..1241980 (+) 1260 WP_002867371.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=326904 FNK00_RS06425 WP_002852840.1 1236549..1237415(-) (pilA) [Campylobacter jejuni strain YH003]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=326904 FNK00_RS06425 WP_002852840.1 1236549..1237415(-) (pilA) [Campylobacter jejuni strain YH003]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434

Multiple sequence alignment