Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EGY13_RS03135 Genome accession   NZ_CP033858
Coordinates   547208..548026 (+) Length   272 a.a.
NCBI ID   WP_000149369.1    Uniprot ID   -
Organism   Acinetobacter sp. FDAARGOS_493     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 542208..553026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY13_RS03100 (EGY13_03100) - 542790..542920 (-) 131 Protein_496 hypothetical protein -
  EGY13_RS03105 (EGY13_03105) rpoZ 542959..543237 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EGY13_RS03110 (EGY13_03110) gmk 543310..543939 (-) 630 WP_000015937.1 guanylate kinase -
  EGY13_RS03115 (EGY13_03115) ispH 544062..545012 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EGY13_RS03120 (EGY13_03120) fimU 545182..545655 (+) 474 WP_001214063.1 pilus assembly FimT family protein Machinery gene
  EGY13_RS03125 (EGY13_03125) pilV 545649..546209 (+) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  EGY13_RS03130 (EGY13_03130) pilW 546210..547211 (+) 1002 WP_000079194.1 PilW family protein Machinery gene
  EGY13_RS03135 (EGY13_03135) pilX 547208..548026 (+) 819 WP_000149369.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EGY13_RS03140 (EGY13_03140) pilY1 548038..551892 (+) 3855 WP_000768953.1 PilC/PilY family type IV pilus protein Machinery gene
  EGY13_RS03145 (EGY13_03145) pilY2 551903..552385 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  EGY13_RS03150 (EGY13_03150) pilE 552382..552807 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28872.68 Da        Isoelectric Point: 5.6905

>NTDB_id=326449 EGY13_RS03135 WP_000149369.1 547208..548026(+) (pilX) [Acinetobacter sp. FDAARGOS_493]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVNI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASNSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=326449 EGY13_RS03135 WP_000149369.1 547208..548026(+) (pilX) [Acinetobacter sp. FDAARGOS_493]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAATATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAAATTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.529

100

0.985

Multiple sequence alignment