Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   EGY13_RS03120 Genome accession   NZ_CP033858
Coordinates   545182..545655 (+) Length   157 a.a.
NCBI ID   WP_001214063.1    Uniprot ID   -
Organism   Acinetobacter sp. FDAARGOS_493     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 540182..550655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY13_RS03095 (EGY13_03095) - 540645..542750 (-) 2106 WP_001117588.1 RelA/SpoT family protein -
  EGY13_RS03100 (EGY13_03100) - 542790..542920 (-) 131 Protein_496 hypothetical protein -
  EGY13_RS03105 (EGY13_03105) rpoZ 542959..543237 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EGY13_RS03110 (EGY13_03110) gmk 543310..543939 (-) 630 WP_000015937.1 guanylate kinase -
  EGY13_RS03115 (EGY13_03115) ispH 544062..545012 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EGY13_RS03120 (EGY13_03120) fimU 545182..545655 (+) 474 WP_001214063.1 pilus assembly FimT family protein Machinery gene
  EGY13_RS03125 (EGY13_03125) pilV 545649..546209 (+) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  EGY13_RS03130 (EGY13_03130) pilW 546210..547211 (+) 1002 WP_000079194.1 PilW family protein Machinery gene
  EGY13_RS03135 (EGY13_03135) pilX 547208..548026 (+) 819 WP_000149369.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=326446 EGY13_RS03120 WP_001214063.1 545182..545655(+) (fimU) [Acinetobacter sp. FDAARGOS_493]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=326446 EGY13_RS03120 WP_001214063.1 545182..545655(+) (fimU) [Acinetobacter sp. FDAARGOS_493]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAATTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment