Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   EGY13_RS03130 Genome accession   NZ_CP033858
Coordinates   546210..547211 (+) Length   333 a.a.
NCBI ID   WP_000079194.1    Uniprot ID   -
Organism   Acinetobacter sp. FDAARGOS_493     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 541210..552211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY13_RS03100 (EGY13_03100) - 542790..542920 (-) 131 Protein_496 hypothetical protein -
  EGY13_RS03105 (EGY13_03105) rpoZ 542959..543237 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EGY13_RS03110 (EGY13_03110) gmk 543310..543939 (-) 630 WP_000015937.1 guanylate kinase -
  EGY13_RS03115 (EGY13_03115) ispH 544062..545012 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EGY13_RS03120 (EGY13_03120) fimU 545182..545655 (+) 474 WP_001214063.1 pilus assembly FimT family protein Machinery gene
  EGY13_RS03125 (EGY13_03125) pilV 545649..546209 (+) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  EGY13_RS03130 (EGY13_03130) pilW 546210..547211 (+) 1002 WP_000079194.1 PilW family protein Machinery gene
  EGY13_RS03135 (EGY13_03135) pilX 547208..548026 (+) 819 WP_000149369.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EGY13_RS03140 (EGY13_03140) pilY1 548038..551892 (+) 3855 WP_000768953.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35878.52 Da        Isoelectric Point: 5.3057

>NTDB_id=326448 EGY13_RS03130 WP_000079194.1 546210..547211(+) (pilW) [Acinetobacter sp. FDAARGOS_493]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEEQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPEVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=326448 EGY13_RS03130 WP_000079194.1 546210..547211(+) (pilW) [Acinetobacter sp. FDAARGOS_493]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGAACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCAGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGAGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGGATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAAGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.799

100

0.988

Multiple sequence alignment