Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FNE85_RS22095 Genome accession   NZ_CP041425
Coordinates   4495527..4496063 (-) Length   178 a.a.
NCBI ID   WP_096129102.1    Uniprot ID   -
Organism   Escherichia coli strain STEC388     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4490527..4501063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE85_RS22075 (FNE85_22410) soxR 4492255..4492719 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  FNE85_RS22080 (FNE85_22415) soxS 4492805..4493128 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  FNE85_RS22085 (FNE85_22420) pdeC 4493131..4494717 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  FNE85_RS22090 (FNE85_22425) yjcB 4495147..4495428 (+) 282 WP_001295689.1 YjcB family protein -
  FNE85_RS22095 (FNE85_22430) ssb 4495527..4496063 (-) 537 WP_096129102.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FNE85_RS22100 (FNE85_22435) uvrA 4496317..4499139 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  FNE85_RS22105 (FNE85_22440) yjbR 4499174..4499530 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FNE85_RS22110 (FNE85_22445) yjbQ 4499534..4499950 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FNE85_RS22115 (FNE85_22450) aphA 4500061..4500774 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18964.96 Da        Isoelectric Point: 5.2358

>NTDB_id=326220 FNE85_RS22095 WP_096129102.1 4495527..4496063(-) (ssb) [Escherichia coli strain STEC388]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGASAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=326220 FNE85_RS22095 WP_096129102.1 4495527..4496063(-) (ssb) [Escherichia coli strain STEC388]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTTCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.747
  ssb Glaesserella parasuis strain SC1401

57.754

100

0.607
  ssb Neisseria meningitidis MC58

46.927

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.472