Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MNOD_RS19720 Genome accession   NC_011894
Coordinates   4245706..4246218 (-) Length   170 a.a.
NCBI ID   WP_015930711.1    Uniprot ID   B8IV04
Organism   Methylobacterium nodulans ORS 2060     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4240706..4251218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNOD_RS49245 - 4242439..4242585 (+) 147 WP_244424802.1 helix-turn-helix transcriptional regulator -
  MNOD_RS19715 (Mnod_4183) - 4243100..4245043 (+) 1944 WP_015930709.1 APC family permease -
  MNOD_RS19720 (Mnod_4185) ssb 4245706..4246218 (-) 513 WP_015930711.1 single-stranded DNA-binding protein Machinery gene
  MNOD_RS19725 (Mnod_4186) - 4246901..4247794 (+) 894 WP_015930712.1 alpha/beta hydrolase -
  MNOD_RS19730 (Mnod_4187) - 4248056..4248628 (+) 573 WP_015930713.1 L,D-transpeptidase -
  MNOD_RS19735 (Mnod_4188) - 4248685..4250994 (-) 2310 WP_015930714.1 Tex family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18706.71 Da        Isoelectric Point: 6.0079

>NTDB_id=32613 MNOD_RS19720 WP_015930711.1 4245706..4246218(-) (ssb) [Methylobacterium nodulans ORS 2060]
MAGSVNKVILVGNLGRDPETRRLTSGDPVVNLRLATSESWKDKATGERKEKTEWHSVVIYNENLARVAEQYLRKGSKVYV
EGQLQTRKWQDQSGVEKYTTEVVLQRFRGELTILDGRGGGETGAMDEMGGGQISRGGDFGGDRSSGGERRPAPAGGSQKR
YDDLDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=32613 MNOD_RS19720 WP_015930711.1 4245706..4246218(-) (ssb) [Methylobacterium nodulans ORS 2060]
ATGGCGGGCAGCGTGAACAAGGTGATCCTGGTGGGCAATCTCGGGCGCGACCCCGAAACCCGCCGCCTCACCTCCGGCGA
CCCGGTGGTCAACCTGAGGCTCGCGACTTCGGAATCCTGGAAGGACAAGGCCACCGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGAGAACCTCGCCCGCGTGGCCGAGCAGTACCTGCGCAAAGGCTCGAAGGTTTACGTC
GAGGGCCAGCTCCAGACCCGCAAGTGGCAGGACCAGTCGGGCGTCGAGAAGTACACGACCGAGGTGGTGCTGCAGCGCTT
CCGCGGCGAGTTGACGATCCTCGACGGGCGCGGCGGCGGCGAGACGGGCGCCATGGACGAGATGGGCGGCGGCCAGATCA
GCCGCGGTGGCGATTTCGGCGGCGACCGCTCGTCCGGCGGTGAGCGCCGTCCGGCTCCGGCGGGGGGTAGCCAGAAGCGC
TACGACGACCTCGACGACGATATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8IV04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.143

100

0.547
  ssb Glaesserella parasuis strain SC1401

45.32

100

0.541
  ssb Neisseria gonorrhoeae MS11

39.344

100

0.424
  ssb Neisseria meningitidis MC58

39.56

100

0.424

Multiple sequence alignment