Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FNE88_RS09370 Genome accession   NZ_CP041411
Coordinates   1947620..1949047 (-) Length   475 a.a.
NCBI ID   WP_000980597.1    Uniprot ID   -
Organism   Escherichia coli strain STEC719     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1942620..1954047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE88_RS09340 (FNE88_09510) yeeZ 1942675..1943499 (+) 825 WP_096998685.1 SDR family oxidoreductase -
  FNE88_RS09345 (FNE88_09515) yeeY 1943545..1944474 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  FNE88_RS09350 (FNE88_09520) yoeI 1944689..1944751 (+) 63 WP_010723108.1 membrane protein YoeI -
  FNE88_RS09355 (FNE88_09525) plaP 1944741..1946099 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FNE88_RS09360 (FNE88_09530) tsuA 1946278..1947336 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  FNE88_RS09365 (FNE88_09535) tsuB 1947350..1947577 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FNE88_RS09370 (FNE88_09540) sbcB 1947620..1949047 (-) 1428 WP_000980597.1 exodeoxyribonuclease I Machinery gene
  FNE88_RS09375 (FNE88_09545) dacD 1949256..1950422 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FNE88_RS09380 (FNE88_09550) sbmC 1950541..1951014 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  FNE88_RS09385 (FNE88_09555) yeeA 1951213..1952271 (+) 1059 WP_001200891.1 FUSC family protein -
  FNE88_RS09390 (FNE88_09560) tmaR 1952443..1952772 (+) 330 WP_000450409.1 DUF496 family protein -
  FNE88_RS09395 (FNE88_09565) - 1952873..1953169 (-) 297 Protein_1858 EutP/PduV family microcompartment system protein -
  FNE88_RS09400 (FNE88_09570) - 1953148..1953507 (+) 360 WP_000543549.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54474.78 Da        Isoelectric Point: 5.4700

>NTDB_id=325955 FNE88_RS09370 WP_000980597.1 1947620..1949047(-) (sbcB) [Escherichia coli strain STEC719]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=325955 FNE88_RS09370 WP_000980597.1 1947620..1949047(-) (sbcB) [Escherichia coli strain STEC719]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCTATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment