Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HAPS_RS09755 Genome accession   NC_011852
Coordinates   1971399..1972595 (-) Length   398 a.a.
NCBI ID   WP_005711777.1    Uniprot ID   B8F826
Organism   Glaesserella parasuis SH0165     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1966399..1977595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAPS_RS12780 (HAPS_2004) - 1966665..1967024 (+) 360 WP_416352709.1 SLC13 family permease -
  HAPS_RS09730 (HAPS_2005) - 1967115..1967504 (-) 390 WP_010787002.1 SufE family protein -
  HAPS_RS09735 (HAPS_2006) clpP 1967605..1968186 (+) 582 WP_010787003.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HAPS_RS09740 (HAPS_2007) clpX 1968193..1969443 (+) 1251 WP_005711769.1 ATP-dependent protease ATP-binding subunit ClpX -
  HAPS_RS09745 (HAPS_2008) dapE 1969517..1970650 (-) 1134 WP_010787004.1 succinyl-diaminopimelate desuccinylase -
  HAPS_RS09750 (HAPS_2009) - 1970734..1971402 (-) 669 WP_015940025.1 prepilin peptidase -
  HAPS_RS09755 (HAPS_2010) pilC 1971399..1972595 (-) 1197 WP_005711777.1 type II secretion system F family protein Machinery gene
  HAPS_RS09760 (HAPS_2011) pilB 1972588..1973973 (-) 1386 WP_015940026.1 GspE/PulE family protein Machinery gene
  HAPS_RS09765 (HAPS_2012) - 1974326..1974691 (-) 366 WP_015940027.1 endonuclease domain-containing protein -
  HAPS_RS09770 (HAPS_2013) pilA 1974964..1975416 (-) 453 WP_010787008.1 pilin Machinery gene
  HAPS_RS09775 (HAPS_2014) radA 1975604..1976980 (+) 1377 WP_010787009.1 DNA repair protein RadA -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45575.38 Da        Isoelectric Point: 10.1129

>NTDB_id=32582 HAPS_RS09755 WP_005711777.1 1971399..1972595(-) (pilC) [Glaesserella parasuis SH0165]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKRLQQKGYSQLSISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFKKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSHFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQGSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=32582 HAPS_RS09755 WP_005711777.1 1971399..1972595(-) (pilC) [Glaesserella parasuis SH0165]
ATGAATAACATTTACGAATTTCAATGGAAAGGACGCAACCGCTTTGGGCAAAAGCAGACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAGAAACGGTTGCAACAAAAAGGATACAGCCAGTTAAGCATTAGCCGACATTTTGCCTTGCCGACTG
CACCAAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTAGCCTTATTAATTCAAGCTAAAATCCCCCTAAAACAGAGT
TTAGTGATGTTGCTTGAAACCTGCCAAAATCGCACTTTTTACCGTTGGCAACAAGAAACAATCCGCTTGATTGAAGCCGG
CTTTGCGTTATCCGTTGCCTTTAAAAAACAGGGAAAATATATTAATCCACAAGAAATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTAATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTGCTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGTTCAAAAGGAAAATCACTCCCTCTAATTACCGAAATACTCTTTAGCCTATCCCATTTTCTAC
AACACTCTATTTTAACACTAATTATTTTATGTGTATTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAAGGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGCTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F826

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

100

100

1
  pilC Haemophilus influenzae 86-028NP

38.155

100

0.384
  pilC Haemophilus influenzae Rd KW20

38.155

100

0.384

Multiple sequence alignment