Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EGY04_RS20000 Genome accession   NZ_CP033800
Coordinates   3729506..3730054 (+) Length   182 a.a.
NCBI ID   WP_032676553.1    Uniprot ID   A0A0J2HGD4
Organism   Enterobacter roggenkampii strain FDAARGOS_523     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3724506..3735054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY04_RS19980 (EGY04_19995) - 3725347..3726069 (+) 723 WP_000818555.1 PFL_4669 family integrating conjugative element protein -
  EGY04_RS19985 (EGY04_20000) - 3726083..3728092 (+) 2010 WP_032676550.1 DNA topoisomerase III -
  EGY04_RS19990 (EGY04_20005) - 3728721..3729212 (+) 492 WP_032676551.1 STY4534 family ICE replication protein -
  EGY04_RS19995 (EGY04_20010) - 3729285..3729488 (+) 204 WP_032676552.1 hypothetical protein -
  EGY04_RS20000 (EGY04_20015) ssb 3729506..3730054 (+) 549 WP_032676553.1 single-stranded DNA-binding protein Machinery gene
  EGY04_RS20005 (EGY04_20020) - 3730133..3730375 (+) 243 WP_001144085.1 DUF4160 domain-containing protein -
  EGY04_RS20010 (EGY04_20025) - 3730359..3730607 (+) 249 WP_000155614.1 DUF2442 domain-containing protein -
  EGY04_RS20015 (EGY04_20030) - 3730916..3731794 (-) 879 WP_032676556.1 metal ABC transporter substrate-binding protein -
  EGY04_RS20020 (EGY04_20035) - 3731797..3732669 (-) 873 WP_032676557.1 metal ABC transporter permease -
  EGY04_RS20025 (EGY04_20040) - 3732666..3733325 (-) 660 WP_032676558.1 metal ABC transporter ATP-binding protein -
  EGY04_RS20030 (EGY04_20045) - 3733720..3733965 (+) 246 WP_032676559.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19834.18 Da        Isoelectric Point: 6.9793

>NTDB_id=325795 EGY04_RS20000 WP_032676553.1 3729506..3730054(+) (ssb) [Enterobacter roggenkampii strain FDAARGOS_523]
MASRGINKVILVGHLGQDPEVRYMPNSTAVTGFSIATSESWRDKQSGEMKENTEWHRVVLFGKLAEIAGEYLKKGSQVYI
EGHLRTRKWTDNGGVERWTTEVVVGVNGTMQMLGSRNAPAGTGNAQQPGSAQGGWGQPQQPQPQQSAAPHNPANEPPMDF
DDDIPFLGHGYGICRKAIYAIS

Nucleotide


Download         Length: 549 bp        

>NTDB_id=325795 EGY04_RS20000 WP_032676553.1 3729506..3730054(+) (ssb) [Enterobacter roggenkampii strain FDAARGOS_523]
ATGGCAAGTCGCGGAATTAACAAAGTTATTCTCGTTGGCCATCTCGGTCAGGACCCCGAAGTACGTTATATGCCCAATAG
CACAGCTGTTACAGGGTTCAGTATTGCAACGTCGGAGTCATGGCGTGATAAACAAAGCGGTGAAATGAAGGAAAACACTG
AGTGGCATCGCGTTGTGTTGTTTGGCAAACTCGCCGAAATAGCCGGTGAATATCTGAAAAAAGGTTCACAGGTATACATT
GAAGGCCATCTGCGGACCCGCAAATGGACTGATAATGGCGGGGTTGAACGCTGGACAACAGAAGTTGTGGTTGGTGTGAA
CGGTACGATGCAGATGCTGGGTAGTCGTAATGCTCCAGCAGGTACCGGTAATGCTCAGCAGCCTGGGTCGGCGCAAGGAG
GTTGGGGGCAGCCTCAGCAGCCTCAGCCTCAGCAGTCAGCTGCGCCACACAATCCTGCTAATGAACCTCCGATGGATTTT
GATGATGACATACCGTTTCTGGGGCATGGTTATGGGATCTGCCGAAAAGCGATCTACGCCATTTCCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2HGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.607

97.802

0.632
  ssb Glaesserella parasuis strain SC1401

48.913

100

0.495
  ssb Neisseria meningitidis MC58

47.727

96.703

0.462
  ssb Neisseria gonorrhoeae MS11

46.023

96.703

0.445

Multiple sequence alignment