Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EGX95_RS26230 Genome accession   NZ_CP033795
Coordinates   4531063..4531584 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus sp. FDAARGOS_527     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4526063..4536584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX95_RS26210 (EGX95_26205) rplI 4527273..4527719 (-) 447 WP_000864231.1 50S ribosomal protein L9 -
  EGX95_RS26215 (EGX95_26210) - 4527716..4529689 (-) 1974 WP_001113897.1 DHH family phosphoesterase -
  EGX95_RS26220 (EGX95_26215) - 4529768..4530703 (-) 936 WP_000799147.1 YybS family protein -
  EGX95_RS26225 (EGX95_26220) rpsR 4530784..4531017 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  EGX95_RS26230 (EGX95_26225) ssbA 4531063..4531584 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  EGX95_RS26235 (EGX95_26230) rpsF 4531611..4531901 (-) 291 WP_001233779.1 30S ribosomal protein S6 -
  EGX95_RS26240 (EGX95_26235) ychF 4532093..4533193 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  EGX95_RS26245 (EGX95_26240) - 4533309..4533506 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  EGX95_RS26250 (EGX95_26245) - 4533527..4534408 (-) 882 WP_000365104.1 mechanosensitive ion channel family protein -
  EGX95_RS26255 (EGX95_26250) yyaC 4534667..4535263 (+) 597 WP_001020720.1 spore protease YyaC -
  EGX95_RS26260 (EGX95_26255) spo0J 4535284..4536135 (-) 852 WP_001051837.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=325775 EGX95_RS26230 WP_000981967.1 4531063..4531584(-) (ssbA) [Bacillus sp. FDAARGOS_527]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=325775 EGX95_RS26230 WP_000981967.1 4531063..4531584(-) (ssbA) [Bacillus sp. FDAARGOS_527]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment