Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HAPS_RS01845 Genome accession   NC_011852
Coordinates   411724..412242 (+) Length   172 a.a.
NCBI ID   WP_012621700.1    Uniprot ID   B8F401
Organism   Glaesserella parasuis SH0165     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 406724..417242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAPS_RS01830 (HAPS_0369) - 407952..408203 (-) 252 WP_041603108.1 hypothetical protein -
  HAPS_RS01835 (HAPS_0370) - 408169..408552 (-) 384 WP_005714445.1 YacL family protein -
  HAPS_RS01840 (HAPS_0371) uvrA 408637..411465 (-) 2829 WP_012621699.1 excinuclease ABC subunit UvrA -
  HAPS_RS01845 (HAPS_0372) ssb 411724..412242 (+) 519 WP_012621700.1 single-stranded DNA-binding protein Machinery gene
  HAPS_RS01850 (HAPS_0373) - 412450..413664 (+) 1215 WP_012621701.1 ATP-binding protein -
  HAPS_RS01855 (HAPS_0374) - 413736..414044 (-) 309 Protein_375 helicase HerA-like domain-containing protein -
  HAPS_RS01860 (HAPS_0375) rhlB 414054..415274 (-) 1221 WP_012621702.1 ATP-dependent RNA helicase RhlB -
  HAPS_RS01865 (HAPS_0376) - 415338..415610 (-) 273 WP_005712616.1 HigA family addiction module antitoxin -
  HAPS_RS01870 (HAPS_0377) - 415621..415899 (-) 279 WP_012621703.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HAPS_RS01875 (HAPS_0378) argF 416048..417058 (+) 1011 WP_005712612.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19296.11 Da        Isoelectric Point: 4.8074

>NTDB_id=32567 HAPS_RS01845 WP_012621700.1 411724..412242(+) (ssb) [Glaesserella parasuis SH0165]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSGDQGGGWNQTQTNYNQDGYTDSYAQNNNFNGGNATRPQPAQKPAAQAE
PPMDNFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=32567 HAPS_RS01845 WP_012621700.1 411724..412242(+) (ssb) [Glaesserella parasuis SH0165]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGCCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAACTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTGCTACAAAT
GTTAGACAGTCGTAGCGGTGATCAAGGTGGTGGCTGGAACCAAACACAAACCAACTACAATCAAGACGGCTACACCGACA
GCTATGCTCAAAATAACAACTTCAACGGAGGCAACGCAACCAGACCGCAACCAGCCCAAAAACCTGCGGCTCAAGCAGAA
CCACCGATGGATAATTTTGATGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F401

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

92.222

100

0.965
  ssb Vibrio cholerae strain A1552

53.039

100

0.558
  ssb Neisseria meningitidis MC58

41.954

100

0.424
  ssb Neisseria gonorrhoeae MS11

41.954

100

0.424

Multiple sequence alignment