Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EGX81_RS15290 Genome accession   NZ_CP033736
Coordinates   3243665..3244192 (+) Length   175 a.a.
NCBI ID   WP_123822438.1    Uniprot ID   -
Organism   Proteus vulgaris strain FDAARGOS_556     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3238665..3249192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX81_RS15285 (EGX81_15355) uvrA 3240578..3243412 (-) 2835 WP_123822437.1 excinuclease ABC subunit UvrA -
  EGX81_RS15290 (EGX81_15360) ssb 3243665..3244192 (+) 528 WP_123822438.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EGX81_RS15295 (EGX81_15365) zur 3244468..3244998 (+) 531 WP_036934579.1 zinc uptake transcriptional repressor Zur -
  EGX81_RS15300 (EGX81_15370) lexA 3245108..3245719 (-) 612 WP_036934582.1 transcriptional repressor LexA -
  EGX81_RS15305 (EGX81_15375) - 3245847..3246218 (-) 372 WP_036934584.1 diacylglycerol kinase -
  EGX81_RS15310 (EGX81_15380) plsB 3246349..3248832 (+) 2484 WP_123822439.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18930.96 Da        Isoelectric Point: 4.9468

>NTDB_id=325219 EGX81_RS15290 WP_123822438.1 3243665..3244192(+) (ssb) [Proteus vulgaris strain FDAARGOS_556]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEIKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAATPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=325219 EGX81_RS15290 WP_123822438.1 3243665..3244192(+) (ssb) [Proteus vulgaris strain FDAARGOS_556]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCGGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTTGCTAACCTAACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATTAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGAAAATTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGCGGCCAAGACAGATATAGCACTGAAGTTGTCGTTAACATCGG
CGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGTGGTCAAGGCGGTTGGGGTCAAC
CACAACAGCCACAAGCATCACAACAATTTAGCGGTGGCGCACAATCTCGCCCAGCACAACAACCCGCAGCAACGCCAGCG
CCAAGCAATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.432

100

0.766
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

47.753

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.486

Multiple sequence alignment