Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CAGG_RS11875 Genome accession   NC_011831
Coordinates   2905100..2905516 (-) Length   138 a.a.
NCBI ID   WP_015941120.1    Uniprot ID   B8G389
Organism   Chloroflexus aggregans DSM 9485     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2900100..2910516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAGG_RS11860 (Cagg_2385) - 2900519..2902303 (-) 1785 WP_015941117.1 peptide ABC transporter substrate-binding protein -
  CAGG_RS11865 (Cagg_2386) - 2902559..2903476 (-) 918 WP_015941118.1 PH domain-containing protein -
  CAGG_RS11870 (Cagg_2387) - 2903549..2905096 (-) 1548 WP_015941119.1 peptidylprolyl isomerase -
  CAGG_RS11875 (Cagg_2388) ssb 2905100..2905516 (-) 417 WP_015941120.1 single-stranded DNA-binding protein Machinery gene
  CAGG_RS11880 (Cagg_2389) rpsF 2905597..2906010 (-) 414 WP_015941121.1 30S ribosomal protein S6 -
  CAGG_RS11885 (Cagg_2390) - 2906152..2906736 (-) 585 WP_015941122.1 NTP transferase domain-containing protein -
  CAGG_RS11890 - 2906955..2907149 (-) 195 WP_041470559.1 hypothetical protein -
  CAGG_RS11895 (Cagg_2392) - 2907153..2908394 (-) 1242 WP_015941123.1 putative sugar nucleotidyl transferase -
  CAGG_RS11900 (Cagg_2393) - 2908680..2910020 (-) 1341 WP_015941124.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15934.75 Da        Isoelectric Point: 6.0997

>NTDB_id=32521 CAGG_RS11875 WP_015941120.1 2905100..2905516(-) (ssb) [Chloroflexus aggregans DSM 9485]
MARDLNKVSIIGRLGADPEFRYTAAGTPVATFRVATSRQWRDPNGHLHEETEWFHVVAWNRLAEICHQYLSRGARVYIEG
RLQTRTWEDAQSGQQRSRVEVIAQDMILLESRESRSDDPPRPPRREPPPDIGDDDIPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=32521 CAGG_RS11875 WP_015941120.1 2905100..2905516(-) (ssb) [Chloroflexus aggregans DSM 9485]
ATGGCGCGAGACTTAAATAAGGTATCGATCATTGGTCGCCTTGGCGCCGACCCAGAATTTCGTTATACCGCCGCCGGCAC
CCCGGTCGCCACATTTCGGGTAGCTACCAGCCGCCAGTGGCGAGATCCGAATGGTCATCTGCACGAGGAAACCGAATGGT
TTCACGTTGTGGCTTGGAATCGATTAGCCGAAATCTGTCATCAATACCTTAGTCGTGGAGCGCGGGTTTATATCGAAGGT
CGCTTGCAAACACGCACATGGGAAGACGCTCAGAGTGGACAACAACGCTCACGAGTCGAAGTCATCGCCCAAGATATGAT
CTTGCTCGAATCGCGTGAGTCGCGATCTGACGATCCACCACGCCCACCACGCCGTGAACCACCACCAGATATCGGTGATG
ATGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8G389

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

38.418

100

0.493
  ssb Neisseria meningitidis MC58

39.08

100

0.493
  ssb Neisseria gonorrhoeae MS11

38.506

100

0.486
  ssb Glaesserella parasuis strain SC1401

45.614

82.609

0.377

Multiple sequence alignment