Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EGX68_RS03380 | Genome accession | NZ_CP033735 |
| Coordinates | 610661..611101 (+) | Length | 146 a.a. |
| NCBI ID | WP_103211317.1 | Uniprot ID | - |
| Organism | Staphylococcus cohnii strain FDAARGOS_538 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 601974..648092 | 610661..611101 | within | 0 |
Gene organization within MGE regions
Location: 601974..648092
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX68_RS03310 (EGX68_03300) | sufB | 601974..603371 (+) | 1398 | WP_019469760.1 | Fe-S cluster assembly protein SufB | - |
| EGX68_RS03315 (EGX68_03305) | - | 603440..604498 (-) | 1059 | WP_019469759.1 | tyrosine-type recombinase/integrase | - |
| EGX68_RS03320 (EGX68_03310) | - | 604560..605108 (-) | 549 | WP_174890065.1 | hypothetical protein | - |
| EGX68_RS03325 (EGX68_03315) | - | 605237..605728 (-) | 492 | WP_103211326.1 | PH domain-containing protein | - |
| EGX68_RS03330 (EGX68_03320) | - | 605744..606208 (-) | 465 | WP_103211325.1 | ImmA/IrrE family metallo-endopeptidase | - |
| EGX68_RS03335 (EGX68_03325) | - | 606220..606552 (-) | 333 | WP_103211324.1 | helix-turn-helix transcriptional regulator | - |
| EGX68_RS03340 (EGX68_03330) | - | 606746..606997 (+) | 252 | WP_069795256.1 | helix-turn-helix transcriptional regulator | - |
| EGX68_RS03345 (EGX68_03335) | - | 606998..607810 (+) | 813 | WP_103211323.1 | DUF3102 domain-containing protein | - |
| EGX68_RS03350 (EGX68_03340) | - | 607814..608662 (+) | 849 | WP_103211322.1 | ParB N-terminal domain-containing protein | - |
| EGX68_RS03355 (EGX68_03345) | - | 608820..609032 (+) | 213 | WP_103211321.1 | hypothetical protein | - |
| EGX68_RS03360 (EGX68_03350) | - | 609029..609238 (-) | 210 | WP_038678654.1 | hypothetical protein | - |
| EGX68_RS03365 (EGX68_03355) | - | 609315..609521 (+) | 207 | WP_103211320.1 | hypothetical protein | - |
| EGX68_RS03370 (EGX68_03360) | - | 609764..610018 (+) | 255 | WP_103211319.1 | hypothetical protein | - |
| EGX68_RS03375 (EGX68_03365) | - | 610011..610658 (+) | 648 | WP_103211318.1 | ERF family protein | - |
| EGX68_RS03380 (EGX68_03370) | ssbA | 610661..611101 (+) | 441 | WP_103211317.1 | single-stranded DNA-binding protein | Machinery gene |
| EGX68_RS03385 (EGX68_03375) | - | 611130..611801 (+) | 672 | WP_103211316.1 | putative HNHc nuclease | - |
| EGX68_RS03390 (EGX68_03380) | - | 611798..612550 (+) | 753 | WP_103211315.1 | DnaD domain protein | - |
| EGX68_RS03395 (EGX68_03385) | - | 612556..612924 (+) | 369 | WP_103211314.1 | hypothetical protein | - |
| EGX68_RS03400 (EGX68_03390) | - | 612914..614149 (+) | 1236 | WP_103211313.1 | DnaB helicase C-terminal domain-containing protein | - |
| EGX68_RS03410 (EGX68_03400) | - | 614343..614579 (+) | 237 | WP_103211311.1 | DUF3269 family protein | - |
| EGX68_RS03415 (EGX68_03405) | - | 614590..615003 (+) | 414 | WP_103211310.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EGX68_RS03420 (EGX68_03410) | - | 614996..615193 (+) | 198 | WP_103211309.1 | hypothetical protein | - |
| EGX68_RS03425 (EGX68_03415) | - | 615195..615596 (+) | 402 | WP_103211308.1 | hypothetical protein | - |
| EGX68_RS03430 (EGX68_03420) | - | 615608..615826 (+) | 219 | WP_103211307.1 | hypothetical protein | - |
| EGX68_RS03435 (EGX68_03425) | - | 615827..616309 (+) | 483 | WP_231912215.1 | DUF3310 domain-containing protein | - |
| EGX68_RS03440 (EGX68_03430) | - | 616310..616615 (+) | 306 | WP_069973593.1 | DUF1140 family protein | - |
| EGX68_RS03445 (EGX68_03440) | - | 616815..617090 (+) | 276 | WP_103211305.1 | hypothetical protein | - |
| EGX68_RS03450 (EGX68_03445) | - | 617091..617339 (+) | 249 | WP_040030406.1 | hypothetical protein | - |
| EGX68_RS03455 (EGX68_03450) | dut | 617336..617758 (+) | 423 | WP_103211304.1 | dUTP diphosphatase | - |
| EGX68_RS03460 (EGX68_03455) | - | 617806..618036 (+) | 231 | WP_103211303.1 | DUF1381 domain-containing protein | - |
| EGX68_RS03465 (EGX68_03460) | - | 618038..618271 (+) | 234 | WP_103211302.1 | hypothetical protein | - |
| EGX68_RS03470 (EGX68_03465) | - | 618273..618407 (+) | 135 | WP_103211301.1 | transcriptional regulator | - |
| EGX68_RS03475 (EGX68_03470) | - | 618407..618634 (+) | 228 | WP_103211300.1 | DUF1514 family protein | - |
| EGX68_RS03480 (EGX68_03475) | - | 618648..619043 (+) | 396 | WP_053464119.1 | hypothetical protein | - |
| EGX68_RS03485 (EGX68_03480) | - | 619322..619636 (+) | 315 | WP_103211299.1 | HNH endonuclease | - |
| EGX68_RS03490 (EGX68_03485) | - | 619821..620183 (+) | 363 | WP_103211298.1 | hypothetical protein | - |
| EGX68_RS03495 (EGX68_03490) | - | 620180..621850 (+) | 1671 | WP_103211297.1 | terminase TerL endonuclease subunit | - |
| EGX68_RS03500 (EGX68_03495) | - | 621866..623044 (+) | 1179 | WP_103211296.1 | phage portal protein | - |
| EGX68_RS03505 (EGX68_03500) | - | 623007..623714 (+) | 708 | WP_103211295.1 | head maturation protease, ClpP-related | - |
| EGX68_RS03510 (EGX68_03505) | - | 623726..624919 (+) | 1194 | WP_103211294.1 | phage major capsid protein | - |
| EGX68_RS03515 (EGX68_03510) | - | 624934..625221 (+) | 288 | WP_103211293.1 | phage head-tail connector protein | - |
| EGX68_RS03520 (EGX68_03515) | - | 625205..625573 (+) | 369 | WP_103211292.1 | hypothetical protein | - |
| EGX68_RS03525 (EGX68_03520) | - | 625563..625952 (+) | 390 | WP_103211291.1 | hypothetical protein | - |
| EGX68_RS03530 (EGX68_03525) | - | 625973..626380 (+) | 408 | WP_126116909.1 | hypothetical protein | - |
| EGX68_RS03535 (EGX68_03530) | - | 626380..626976 (+) | 597 | WP_103211289.1 | major tail protein | - |
| EGX68_RS03540 (EGX68_03535) | - | 626995..627192 (+) | 198 | WP_103211288.1 | hypothetical protein | - |
| EGX68_RS03545 (EGX68_03540) | gpG | 627262..627621 (+) | 360 | WP_103211287.1 | phage tail assembly chaperone G | - |
| EGX68_RS03550 (EGX68_03545) | gpG | 627691..628158 (+) | 468 | WP_147096598.1 | phage tail assembly chaperone G | - |
| EGX68_RS03555 (EGX68_03550) | - | 628300..633405 (+) | 5106 | WP_103211285.1 | phage tail tape measure protein | - |
| EGX68_RS03560 (EGX68_03555) | - | 633427..634260 (+) | 834 | WP_231912214.1 | phage tail domain-containing protein | - |
| EGX68_RS03565 (EGX68_03560) | - | 634273..636189 (+) | 1917 | WP_103211284.1 | hypothetical protein | - |
| EGX68_RS03570 (EGX68_03565) | - | 636251..638707 (+) | 2457 | WP_103211283.1 | phage tail spike protein | - |
| EGX68_RS13490 | - | 638694..638846 (+) | 153 | WP_172459302.1 | hypothetical protein | - |
| EGX68_RS03575 (EGX68_03570) | - | 638884..639306 (+) | 423 | WP_103211282.1 | hypothetical protein | - |
| EGX68_RS03580 (EGX68_03575) | - | 639293..639691 (+) | 399 | WP_103211281.1 | hypothetical protein | - |
| EGX68_RS03585 (EGX68_03580) | - | 639797..640279 (+) | 483 | WP_103211280.1 | phage holin | - |
| EGX68_RS03590 (EGX68_03585) | - | 640266..641744 (+) | 1479 | WP_103211279.1 | SH3 domain-containing protein | - |
| EGX68_RS03595 (EGX68_03590) | - | 641812..643215 (+) | 1404 | WP_103211278.1 | hypothetical protein | - |
| EGX68_RS03600 (EGX68_03595) | - | 644078..645097 (+) | 1020 | WP_019469692.1 | hemolysin family protein | - |
| EGX68_RS03605 (EGX68_03600) | - | 645150..646217 (+) | 1068 | WP_040030172.1 | nitronate monooxygenase family protein | - |
| EGX68_RS03610 (EGX68_03605) | - | 646407..647255 (+) | 849 | WP_103211277.1 | DUF72 domain-containing protein | - |
| EGX68_RS03615 (EGX68_03610) | - | 647268..648092 (+) | 825 | WP_019469689.1 | sulfite exporter TauE/SafE family protein | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 16426.21 Da Isoelectric Point: 5.9067
>NTDB_id=325176 EGX68_RS03380 WP_103211317.1 610661..611101(+) (ssbA) [Staphylococcus cohnii strain FDAARGOS_538]
MINRVILVGRLTKDPEFRTTPSGVNVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNKYLFKGHLAGVDGRIQSR
SYENQEGRRIFVTEVVTDSVQFLETKNNEQKQNVSKGQQTGTNNQQLSNDNPFANGVDVDPDDLPF
MINRVILVGRLTKDPEFRTTPSGVNVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNKYLFKGHLAGVDGRIQSR
SYENQEGRRIFVTEVVTDSVQFLETKNNEQKQNVSKGQQTGTNNQQLSNDNPFANGVDVDPDDLPF
Nucleotide
Download Length: 441 bp
>NTDB_id=325176 EGX68_RS03380 WP_103211317.1 610661..611101(+) (ssbA) [Staphylococcus cohnii strain FDAARGOS_538]
ATGATAAACAGAGTAATTTTAGTCGGTCGTTTAACTAAAGACCCAGAATTCAGAACAACACCATCTGGCGTGAATGTCGC
AACTTTCACGTTAGCAGTCAATCGTACATTCACAAATGCGCAAGGTGAACGTGAAGCAGATTTTATAAACTGTGTTGTAT
TTAGAAAGCAAGCAGAGAATGTAAACAAATACTTATTTAAAGGCCATTTAGCTGGTGTTGATGGCCGTATCCAATCACGT
AGCTATGAAAACCAAGAGGGGCGTCGTATTTTCGTTACCGAAGTTGTTACGGACAGCGTACAGTTCTTAGAGACAAAGAA
TAACGAACAGAAACAGAATGTTTCAAAAGGACAACAGACTGGCACAAATAACCAACAGTTAAGCAATGACAATCCATTTG
CAAACGGTGTAGATGTGGACCCGGACGATTTGCCATTTTAA
ATGATAAACAGAGTAATTTTAGTCGGTCGTTTAACTAAAGACCCAGAATTCAGAACAACACCATCTGGCGTGAATGTCGC
AACTTTCACGTTAGCAGTCAATCGTACATTCACAAATGCGCAAGGTGAACGTGAAGCAGATTTTATAAACTGTGTTGTAT
TTAGAAAGCAAGCAGAGAATGTAAACAAATACTTATTTAAAGGCCATTTAGCTGGTGTTGATGGCCGTATCCAATCACGT
AGCTATGAAAACCAAGAGGGGCGTCGTATTTTCGTTACCGAAGTTGTTACGGACAGCGTACAGTTCTTAGAGACAAAGAA
TAACGAACAGAAACAGAATGTTTCAAAAGGACAACAGACTGGCACAAATAACCAACAGTTAAGCAATGACAATCCATTTG
CAAACGGTGTAGATGTGGACCCGGACGATTTGCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.233 |
100 |
0.651 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.61 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.637 |
77.397 |
0.438 |
| ssbA | Streptococcus mutans UA159 |
39.041 |
100 |
0.39 |