Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   FKM99_RS22315 Genome accession   NZ_CP041202
Coordinates   2687317..2688000 (+) Length   227 a.a.
NCBI ID   WP_077671779.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vb0624     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2682317..2693000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKM99_RS22290 (FKM99_22290) - 2683276..2684292 (-) 1017 WP_077671781.1 YqaJ viral recombinase family protein -
  FKM99_RS26920 - 2684354..2684497 (-) 144 WP_169674712.1 hypothetical protein -
  FKM99_RS22295 (FKM99_22295) bet 2684579..2685397 (-) 819 WP_000414662.1 phage recombination protein Bet -
  FKM99_RS22300 (FKM99_22300) - 2685477..2685896 (-) 420 WP_141180370.1 single-stranded DNA-binding protein -
  FKM99_RS22305 (FKM99_22305) - 2685912..2686238 (-) 327 WP_141180371.1 plasmid-related protein -
  FKM99_RS22310 (FKM99_22310) - 2686606..2687208 (+) 603 WP_032081055.1 hypothetical protein -
  FKM99_RS22315 (FKM99_22315) ideA 2687317..2688000 (+) 684 WP_077671779.1 endonuclease Regulator
  FKM99_RS22320 (FKM99_22320) - 2688172..2689146 (-) 975 WP_077671778.1 caspase family protein -
  FKM99_RS22325 (FKM99_22325) - 2689157..2689540 (-) 384 WP_077671777.1 TIR domain-containing protein -
  FKM99_RS22335 (FKM99_22335) - 2689744..2690952 (+) 1209 Protein_2435 IS4-like element ISVsa5 family transposase -
  FKM99_RS27340 (FKM99_22340) - 2690962..2691087 (-) 126 WP_001303004.1 LysR family transcriptional regulator -
  FKM99_RS22345 (FKM99_22345) gltS 2691318..2692523 (-) 1206 WP_000599531.1 sodium/glutamate symporter -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26505.62 Da        Isoelectric Point: 7.1838

>NTDB_id=325069 FKM99_RS22315 WP_077671779.1 2687317..2688000(+) (ideA) [Vibrio parahaemolyticus strain Vb0624]
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKSILGKSNCYVSDSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=325069 FKM99_RS22315 WP_077671779.1 2687317..2688000(+) (ideA) [Vibrio parahaemolyticus strain Vb0624]
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGCTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGTGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTTTTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTGCGTGATTTTAAGATTAAAA
GTATTCTAGGTAAATCAAATTGCTATGTATCAGATAGCTGTTAA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(41-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

95.154

100

0.952
  dns Aliivibrio fischeri ES114

50.87

100

0.515
  dns Vibrio parahaemolyticus RIMD 2210633

51.092

100

0.515
  dns Vibrio cholerae strain A1552

50.667

99.119

0.502
  dns Campylobacter jejuni RM1221

37.778

99.119

0.374