Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIR93_RS21295 Genome accession   NZ_CP041031
Coordinates   4404549..4405085 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PT109     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4399549..4410085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIR93_RS21265 (FIR93_21265) soxR 4400501..4400965 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  FIR93_RS21270 (FIR93_21270) soxS 4401051..4401374 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  FIR93_RS21275 (FIR93_21275) pdeC 4401377..4402096 (-) 720 Protein_4215 c-di-GMP phosphodiesterase PdeC -
  FIR93_RS21285 (FIR93_21285) pdeC 4402864..4403739 (-) 876 Protein_4217 c-di-GMP phosphodiesterase PdeC -
  FIR93_RS21290 (FIR93_21290) yjcB 4404169..4404450 (+) 282 WP_001295689.1 YjcB family protein -
  FIR93_RS21295 (FIR93_21295) ssb 4404549..4405085 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FIR93_RS21300 (FIR93_21300) uvrA 4405339..4408161 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  FIR93_RS21305 (FIR93_21305) yjbR 4408196..4408552 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FIR93_RS21310 (FIR93_21310) yjbQ 4408556..4408972 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FIR93_RS21315 (FIR93_21315) aphA 4409083..4409796 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=324535 FIR93_RS21295 WP_000168305.1 4404549..4405085(-) (ssb) [Escherichia coli strain PT109]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=324535 FIR93_RS21295 WP_000168305.1 4404549..4405085(-) (ssb) [Escherichia coli strain PT109]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489