Detailed information NTG0324515

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: DWG24_RS03885
• Genome accession: NZ_CP033622
• Coordinates: 862145..862693 (-)
• Length: 182 a.a.
• NCBI ID: WP_168361586.1
• Uniprot ID: A0AAE6YWZ0
• Organism: Dickeya zeae strain CE1
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	851244..862693	862145..862693	within	0

Gene organization within MGE regions

Location: 851244..862693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DWG24_RS03810 (DWG24_03830)	-	851244..851663 (-)	420	WP_168361575.1	GPW/gp25 family protein	-
DWG24_RS03815 (DWG24_03835)	-	851666..851965 (-)	300	WP_016940542.1	PAAR domain-containing protein	-
DWG24_RS03820 (DWG24_03840)	vgrG	852079..853869 (-)	1791	WP_168361576.1	type VI secretion system tip protein VgrG	-
DWG24_RS03825 (DWG24_03845)	-	853882..854529 (-)	648	WP_023640714.1	hypothetical protein	-
DWG24_RS03830 (DWG24_03850)	-	854544..854744 (-)	201	WP_168361577.1	hypothetical protein	-
DWG24_RS03835 (DWG24_03855)	-	854765..855223 (-)	459	WP_240947087.1	phage tail protein	-
DWG24_RS03840 (DWG24_03860)	-	855330..855800 (-)	471	WP_168361578.1	phage tail protein	-
DWG24_RS03845 (DWG24_03865)	-	855927..857480 (-)	1554	WP_019843445.1	phage tail sheath family protein	-
DWG24_RS03850 (DWG24_03870)	-	857609..858418 (-)	810	WP_168361579.1	hypothetical protein	-
DWG24_RS03855 (DWG24_03875)	-	858415..858996 (-)	582	WP_168361580.1	DUF4255 domain-containing protein	-
DWG24_RS03860 (DWG24_03880)	-	859229..859717 (-)	489	WP_168361581.1	hypothetical protein	-
DWG24_RS03865 (DWG24_03885)	-	859908..860537 (+)	630	WP_168361582.1	NAD-dependent dehydratase	-
DWG24_RS03870 (DWG24_03890)	-	860580..861155 (+)	576	WP_168361583.1	flavin reductase family protein	-
DWG24_RS03875 (DWG24_03895)	-	861262..861738 (-)	477	WP_168361584.1	hypothetical protein	-
DWG24_RS03880 (DWG24_03900)	-	861842..862039 (-)	198	WP_240947089.1	hypothetical protein	-
DWG24_RS03885 (DWG24_03905)	ssb	862145..862693 (-)	549	WP_168361586.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 182 a.a.
• Molecular weight: 19468.45 Da
• Isoelectric Point: 5.2440

>NTDB_id=324515 DWG24_RS03885 WP_168361586.1 862145..862693(-) (ssb) [Dickeya zeae strain CE1]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQSR
AQQSAPMPSNEPPMDFDDDIPF

Nucleotide

• Length: 549 bp

>NTDB_id=324515 DWG24_RS03885 WP_168361586.1 862145..862693(-) (ssb) [Dickeya zeae strain CE1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACTG
AGTGGCACCGCGTCGCACTGTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATT
GAAGGTCAGTTGCGTACCCGTAAATGGCAGGATCAAGGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGCGCACCTGCTGGTGGCAACATGGGCGGCAATACGGGTGGTG
GTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGCCAGTCCCGT
GCGCAGCAAAGCGCCCCGATGCCGAGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	73.118	100	0.747
ssb	Glaesserella parasuis strain SC1401	54.787	100	0.566
ssb	Neisseria meningitidis MC58	44.974	100	0.467
ssb	Neisseria gonorrhoeae MS11	45.652	100	0.462