Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SMUNN2025_RS07555 Genome accession   NC_013928
Coordinates   1554234..1554899 (-) Length   221 a.a.
NCBI ID   WP_012997900.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1549234..1559899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS07535 (SmuNN2025_1469) - 1549954..1550589 (+) 636 WP_002271877.1 hypothetical protein -
  SMUNN2025_RS07540 (SmuNN2025_1470) - 1550669..1552369 (-) 1701 WP_002287673.1 zinc ribbon domain-containing protein -
  SMUNN2025_RS07545 (SmuNN2025_1471) - 1552389..1553483 (-) 1095 WP_002268894.1 hypothetical protein -
  SMUNN2025_RS07550 (SmuNN2025_1472) hpf 1553607..1554155 (-) 549 WP_002263024.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SMUNN2025_RS07555 (SmuNN2025_1473) comFC/cflB 1554234..1554899 (-) 666 WP_012997900.1 ComF family protein Machinery gene
  SMUNN2025_RS07560 (SmuNN2025_1474) comFA/cflA 1554896..1556197 (-) 1302 WP_002277412.1 DEAD/DEAH box helicase Machinery gene
  SMUNN2025_RS07565 (SmuNN2025_1475) - 1556270..1556899 (+) 630 WP_002267042.1 YigZ family protein -
  SMUNN2025_RS07570 (SmuNN2025_1476) cysK 1556990..1557916 (+) 927 WP_002277411.1 cysteine synthase A -
  SMUNN2025_RS07575 (SmuNN2025_1477) - 1558252..1559343 (-) 1092 WP_002263029.1 glycerol dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25988.00 Da        Isoelectric Point: 8.6857

>NTDB_id=32442 SMUNN2025_RS07555 WP_012997900.1 1554234..1554899(-) (comFC/cflB) [Streptococcus mutans NN2025]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAQFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLLENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=32442 SMUNN2025_RS07555 WP_012997900.1 1554234..1554899(-) (comFC/cflB) [Streptococcus mutans NN2025]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCTAGAGA
TTTTGTTTGCCCACCTTGTTTTGCGCAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTTTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCTTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439

Multiple sequence alignment