Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | EFD52_RS09985 | Genome accession | NZ_CP033606 |
| Coordinates | 2028696..2028992 (-) | Length | 98 a.a. |
| NCBI ID | WP_010906316.1 | Uniprot ID | A0A3N6L9Y1 |
| Organism | Lactococcus lactis strain IL6288 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2023696..2033992
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EFD52_RS09950 (EFD52_09950) | - | 2023986..2024852 (+) | 867 | WP_010906309.1 | RluA family pseudouridine synthase | - |
| EFD52_RS09955 (EFD52_09955) | - | 2024891..2025700 (-) | 810 | WP_010906310.1 | metal ABC transporter permease | - |
| EFD52_RS09960 (EFD52_09960) | - | 2025693..2026430 (-) | 738 | WP_010906311.1 | metal ABC transporter ATP-binding protein | - |
| EFD52_RS09965 (EFD52_09965) | - | 2026607..2027449 (-) | 843 | WP_010906312.1 | metal ABC transporter substrate-binding protein | - |
| EFD52_RS09970 (EFD52_09970) | - | 2027446..2027883 (-) | 438 | WP_010906313.1 | zinc-dependent MarR family transcriptional regulator | - |
| EFD52_RS09975 (EFD52_09975) | comGG | 2027964..2028248 (-) | 285 | WP_010906314.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| EFD52_RS09980 (EFD52_09980) | comGF | 2028287..2028733 (-) | 447 | WP_164752712.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| EFD52_RS09985 (EFD52_09985) | comGE | 2028696..2028992 (-) | 297 | WP_010906316.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| EFD52_RS09990 (EFD52_09990) | comGD | 2028964..2029362 (-) | 399 | WP_021214886.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EFD52_RS09995 (EFD52_09995) | comGC | 2029355..2029738 (-) | 384 | WP_010906318.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EFD52_RS10000 (EFD52_10000) | comGB | 2029752..2030825 (-) | 1074 | WP_010906319.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EFD52_RS10005 (EFD52_10005) | comGA | 2030719..2031657 (-) | 939 | WP_010906320.1 | competence type IV pilus ATPase ComGA | Machinery gene |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 11076.95 Da Isoelectric Point: 6.4684
>NTDB_id=324339 EFD52_RS09985 WP_010906316.1 2028696..2028992(-) (comGE) [Lactococcus lactis strain IL6288]
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS
Nucleotide
Download Length: 297 bp
>NTDB_id=324339 EFD52_RS09985 WP_010906316.1 2028696..2028992(-) (comGE) [Lactococcus lactis strain IL6288]
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Lactococcus lactis subsp. cremoris KW2 |
68.041 |
98.98 |
0.673 |