Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   EFD52_RS07990 Genome accession   NZ_CP033606
Coordinates   1641899..1642888 (-) Length   329 a.a.
NCBI ID   WP_010906110.1    Uniprot ID   A0AAC9W770
Organism   Lactococcus lactis strain IL6288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1636899..1647888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD52_RS07975 (EFD52_07975) - 1638265..1639191 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  EFD52_RS07980 (EFD52_07980) - 1639345..1640028 (-) 684 WP_010906108.1 O-methyltransferase -
  EFD52_RS07985 (EFD52_07985) pepF 1640031..1641836 (-) 1806 WP_010906109.1 oligoendopeptidase F Regulator
  EFD52_RS07990 (EFD52_07990) coiA 1641899..1642888 (-) 990 WP_010906110.1 competence protein CoiA Machinery gene
  EFD52_RS07995 (EFD52_07995) - 1642962..1644047 (-) 1086 WP_003130405.1 YdcF family protein -
  EFD52_RS08000 (EFD52_08000) - 1644209..1645033 (-) 825 WP_023164441.1 alpha/beta hydrolase -
  EFD52_RS08005 (EFD52_08005) - 1645249..1646670 (-) 1422 WP_003130403.1 solute carrier family 23 protein -
  EFD52_RS08010 (EFD52_08010) - 1646977..1647813 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39426.97 Da        Isoelectric Point: 8.0231

>NTDB_id=324325 EFD52_RS07990 WP_010906110.1 1641899..1642888(-) (coiA) [Lactococcus lactis strain IL6288]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDTIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDEIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYVIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=324325 EFD52_RS07990 WP_010906110.1 1641899..1642888(-) (coiA) [Lactococcus lactis strain IL6288]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATACAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCGGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTTATTGCGCC
TTTGGGGTTGAACTTACTTGAAGTTTTTGATGATGAAATCCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGTTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.847

99.088

0.742
  coiA Streptococcus mitis NCTC 12261

43.789

97.872

0.429
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426

Multiple sequence alignment