Detailed information NTG0324260

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: EFI48_RS02630
• Genome accession: NZ_CP033604
• Coordinates: 552418..553005 (-)
• Length: 195 a.a.
• NCBI ID: WP_005340181.1
• Uniprot ID: A0A165S798
• Organism: Aeromonas veronii strain MS-18-37
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	538192..552147	552418..553005	flank	271
IScluster/Tn	551021..552147	552418..553005	flank	271

Gene organization within MGE regions

Location: 538192..553005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EFI48_RS02560 (EFI48_02560)	-	538192..538383 (+)	192	WP_017780887.1	hypothetical protein	-
EFI48_RS02565 (EFI48_02565)	-	538715..539044 (-)	330	WP_272940813.1	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	-
EFI48_RS02570 (EFI48_02570)	-	539059..540155 (-)	1097	Protein_487	ISAs1-like element ISAeme2 family transposase	-
EFI48_RS02575 (EFI48_02575)	-	540239..540571 (-)	333	Protein_488	tetracycline resistance transcriptional repressor TetR(E)	-
EFI48_RS02580 (EFI48_02580)	tet(E)	540652..541869 (+)	1218	WP_017780889.1	tetracycline efflux MFS transporter Tet(E)	-
EFI48_RS02585 (EFI48_02585)	-	541957..542625 (-)	669	WP_017780890.1	hypothetical protein	-
EFI48_RS21925 (EFI48_02590)	-	542784..542945 (-)	162	Protein_491	IS5/IS1182 family transposase	-
EFI48_RS02595 (EFI48_02595)	-	543163..545325 (-)	2163	WP_025202554.1	AAA family ATPase	-
EFI48_RS02600 (EFI48_02600)	-	545322..545759 (-)	438	WP_025202555.1	VPA1267 family protein	-
EFI48_RS02605 (EFI48_02605)	-	545759..546238 (-)	480	WP_049866848.1	hypothetical protein	-
EFI48_RS02610 (EFI48_02610)	-	546226..548103 (-)	1878	WP_041207315.1	integrase	-
EFI48_RS02615 (EFI48_02615)	-	548113..549681 (-)	1569	WP_171269322.1	site-specific integrase	-
EFI48_RS02620 (EFI48_02620)	-	549678..551024 (-)	1347	WP_123172278.1	site-specific integrase	-
EFI48_RS02625 (EFI48_02625)	-	551021..552147 (-)	1127	Protein_498	ISAs1 family transposase	-
EFI48_RS02630 (EFI48_02630)	ssb	552418..553005 (-)	588	WP_005340181.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 195 a.a.
• Molecular weight: 21583.11 Da
• Isoelectric Point: 5.9301

>NTDB_id=324260 EFI48_RS02630 WP_005340181.1 552418..553005(-) (ssb) [Aeromonas veronii strain MS-18-37]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide

• Length: 588 bp

>NTDB_id=324260 EFI48_RS02630 WP_005340181.1 552418..553005(-) (ssb) [Aeromonas veronii strain MS-18-37]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAAGTCTATGTA
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGTTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGTGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-107)

3D structure

• AlphaFold DB: A0A165S798

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	69.347	100	0.708
ssb	Glaesserella parasuis strain SC1401	53.886	98.974	0.533
ssb	Neisseria meningitidis MC58	46.597	97.949	0.456
ssb	Neisseria gonorrhoeae MS11	46.842	97.436	0.456