Detailed information NTG0324257

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EFI48_RS02160
• Genome accession: NZ_CP033604
• Coordinates: 450976..451848 (-)
• Length: 290 a.a.
• NCBI ID: WP_123172237.1
• Uniprot ID: A0AAN1QBA7
• Organism: Aeromonas veronii strain MS-18-37
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 445976..456848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EFI48_RS02135 (EFI48_02135)	secA	445997..448717 (+)	2721	WP_005336144.1	preprotein translocase subunit SecA	-
EFI48_RS02140 (EFI48_02140)	mutT	448902..449306 (+)	405	WP_019444787.1	8-oxo-dGTP diphosphatase MutT	-
EFI48_RS02145 (EFI48_02145)	yacG	449384..449578 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
EFI48_RS02150 (EFI48_02150)	zapD	449588..450310 (-)	723	WP_164461667.1	cell division protein ZapD	-
EFI48_RS02155 (EFI48_02155)	coaE	450348..450962 (-)	615	WP_123172236.1	dephospho-CoA kinase	-
EFI48_RS02160 (EFI48_02160)	pilD	450976..451848 (-)	873	WP_123172237.1	prepilin peptidase	Machinery gene
EFI48_RS02165 (EFI48_02165)	pilC	451910..453151 (-)	1242	WP_005355091.1	type II secretion system F family protein	Machinery gene
EFI48_RS02170 (EFI48_02170)	pilB	453391..455097 (-)	1707	WP_123172238.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
EFI48_RS02175 (EFI48_02175)	-	455097..455564 (-)	468	WP_123172239.1	pilin	-
EFI48_RS02185 (EFI48_02185)	nadC	455880..456755 (-)	876	WP_123172240.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32169.44 Da
• Isoelectric Point: 6.7414

>NTDB_id=324257 EFI48_RS02160 WP_123172237.1 450976..451848(-) (pilD) [Aeromonas veronii strain MS-18-37]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFSPDEEANAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLASGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=324257 EFI48_RS02160 WP_123172237.1 450976..451848(-) (pilD) [Aeromonas veronii strain MS-18-37]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCTCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCGGCTACTTTT
CCCCCGATGAGGAGGCCAATGCGCCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGTCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTACTGACCGCCCTGCTCTCGGTGGCCGTAGCCATGGTCATAACGCCGGGCTGGGGCA
CACTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAAGTGGCTTCGTACCGCTGGCAGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACCGGCAAAGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTAGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.627	98.966	0.6
pilD	Vibrio campbellii strain DS40M4	56.597	99.31	0.562
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.248	91.724	0.452