Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EEY85_RS00860 Genome accession   NZ_CP033601
Coordinates   174502..174975 (+) Length   157 a.a.
NCBI ID   WP_003774356.1    Uniprot ID   A0AAU9VGH2
Organism   Erysipelothrix rhusiopathiae strain KC-Sb-R1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 169502..179975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEY85_RS00830 (EEY85_00830) lysS 169795..171279 (+) 1485 WP_003774347.1 lysine--tRNA ligase -
  EEY85_RS00835 (EEY85_00835) - 171316..171855 (-) 540 WP_123170942.1 chromate transporter -
  EEY85_RS00840 (EEY85_00840) - 171839..172402 (-) 564 WP_123170943.1 chromate transporter -
  EEY85_RS00845 (EEY85_00845) - 172496..173347 (+) 852 WP_123170944.1 LysR family transcriptional regulator -
  EEY85_RS00850 (EEY85_00850) - 173409..174047 (+) 639 WP_003774352.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EEY85_RS00855 (EEY85_00855) rpsF 174187..174477 (+) 291 WP_003774354.1 30S ribosomal protein S6 -
  EEY85_RS00860 (EEY85_00860) ssb 174502..174975 (+) 474 WP_003774356.1 single-stranded DNA-binding protein Machinery gene
  EEY85_RS00865 (EEY85_00865) rpsR 174993..175226 (+) 234 WP_003774357.1 30S ribosomal protein S18 -
  EEY85_RS00870 (EEY85_00870) - 175280..175819 (+) 540 WP_123170945.1 DUF2232 domain-containing protein -
  EEY85_RS00875 (EEY85_00875) - 175866..177821 (+) 1956 WP_123170946.1 DHH family phosphoesterase -
  EEY85_RS00880 (EEY85_00880) rplI 177823..178269 (+) 447 WP_013853429.1 50S ribosomal protein L9 -
  EEY85_RS00885 (EEY85_00885) dnaB 178281..179651 (+) 1371 WP_003774361.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17584.36 Da        Isoelectric Point: 4.4023

>NTDB_id=324247 EEY85_RS00860 WP_003774356.1 174502..174975(+) (ssb) [Erysipelothrix rhusiopathiae strain KC-Sb-R1]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNQTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQNSNQGGSSYTPSYQADPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=324247 EEY85_RS00860 WP_003774356.1 174502..174975(+) (ssb) [Erysipelothrix rhusiopathiae strain KC-Sb-R1]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACAGGTAAATCAGTCGT
TTCGTTTACTGTAGCGTGCAACCGCCGCTTTGGACAACAAGATGAAACTGATTTTATCAATTGTGTGGCTTGGAATCAAA
CAGCTGATTTTATGGCAAATTACTTACTAAAGGGTGCTTTAGTAGGTCTAGAAGGTCGAATTCAATCGAGATCATATGAA
GACGCTACCGGTAAACGTGTATATGTTCAAGAGGTTGTTGTGGATACACTTCAATCACTCGAATCACGCGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGCCAATATCAGAATCAAAACAGTAATCAAGGTGGATCAAGTTATACACCTTCATACCAAG
CTGATCCTGAACCATCGTTCTCAATGGATGATGAGCCTGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

36.994

100

0.408
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.369

Multiple sequence alignment