Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   EEX22_RS08705 Genome accession   NZ_CP033598
Coordinates   1895637..1896758 (+) Length   373 a.a.
NCBI ID   WP_014668489.1    Uniprot ID   A0A849CTM5
Organism   Pasteurella multocida strain CQ7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1890637..1901758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEX22_RS08685 (EEX22_08720) napG 1892816..1893568 (+) 753 WP_005718376.1 ferredoxin-type protein NapG -
  EEX22_RS08690 (EEX22_08725) napH 1893568..1894443 (+) 876 WP_156732497.1 quinol dehydrogenase ferredoxin subunit NapH -
  EEX22_RS08695 (EEX22_08730) - 1894449..1894874 (+) 426 WP_005718380.1 nitrate reductase cytochrome c-type subunit -
  EEX22_RS08700 (EEX22_08735) - 1894890..1895483 (+) 594 WP_156732498.1 cytochrome c3 family protein -
  EEX22_RS08705 (EEX22_08740) dprA 1895637..1896758 (+) 1122 WP_014668489.1 DNA-processing protein DprA Machinery gene
  EEX22_RS08710 (EEX22_08745) lptD 1896864..1899212 (-) 2349 WP_156732499.1 LPS assembly protein LptD -
  EEX22_RS08715 (EEX22_08750) - 1899276..1899827 (-) 552 WP_010907245.1 DNA-3-methyladenine glycosylase I -
  EEX22_RS08720 (EEX22_08755) tal 1899985..1900938 (+) 954 WP_156732500.1 transaldolase -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 41595.75 Da        Isoelectric Point: 6.2635

>NTDB_id=324199 EEX22_RS08705 WP_014668489.1 1895637..1896758(+) (dprA) [Pasteurella multocida strain CQ7]
MSSYLPLLLRLLQIPRLGSLAIQRLLEHVSPAELMEYDTKAFQQIGWTAQQIQRWFTPENRYIDPALAWVNEQQHIVDWF
DPHYPPLLKQTEGAPLVLFVKGEVATLSAQQVAIVGSRHCSRYGEYWANYFATQLAYADIVVTSGLALGIDGFSHQAVVD
IHGKTIAVLGSGLEVIYPKKHRGLAEKIIEHQGALVSEFLPFQPPVAENFPRRNRIISGLSLGTLVIEASEHSGSLITAR
YALEQNRDVFALPGQIQHGFSQGCHKLIKQGAILVESIQDILEHLSPYSHCAMPALPRTENAFSQQVTDTSTINTARITP
EHPELYAKIGYMPVSIDVLAQQVNLPVDTLLVQLLTLELQDLIVAENGLYQRK

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=324199 EEX22_RS08705 WP_014668489.1 1895637..1896758(+) (dprA) [Pasteurella multocida strain CQ7]
ATGTCATCTTATCTGCCTCTTTTATTACGTTTGTTACAAATTCCGCGTTTGGGTTCGCTGGCGATCCAGCGTTTATTGGA
GCACGTCAGTCCAGCGGAATTAATGGAATATGATACAAAAGCCTTTCAACAGATAGGCTGGACGGCACAGCAGATTCAGC
GTTGGTTTACGCCTGAGAACCGTTATATTGATCCCGCGTTAGCCTGGGTAAACGAACAACAACATATTGTGGATTGGTTT
GATCCTCATTATCCTCCCTTGTTAAAGCAAACAGAAGGGGCACCACTTGTCTTGTTTGTGAAAGGGGAAGTGGCTACGCT
ATCTGCACAGCAAGTGGCGATCGTGGGCAGTCGTCATTGTTCACGTTATGGGGAATACTGGGCAAACTATTTCGCCACCC
AACTGGCTTATGCCGATATTGTGGTGACCAGTGGTTTAGCGTTAGGTATTGATGGTTTCTCACATCAAGCGGTGGTGGAT
ATCCACGGGAAGACGATTGCAGTATTAGGCAGTGGTTTAGAGGTCATTTATCCGAAAAAACACCGAGGTTTAGCCGAAAA
AATTATTGAACATCAAGGTGCGTTAGTGTCTGAATTTTTACCTTTCCAGCCCCCTGTGGCAGAAAACTTTCCACGTCGTA
ATCGCATTATTAGTGGTTTGTCTTTGGGGACATTAGTCATTGAAGCCTCAGAACACAGTGGTTCTTTAATTACTGCCCGC
TATGCTTTAGAGCAAAATCGAGATGTTTTTGCGTTACCGGGGCAGATTCAGCATGGATTTAGCCAAGGTTGTCATAAACT
GATTAAACAGGGAGCAATATTAGTCGAAAGTATTCAGGATATTTTAGAACATCTCTCGCCTTATTCGCATTGTGCCATGC
CAGCGTTGCCTCGTACGGAGAACGCCTTTTCTCAACAAGTAACAGACACATCAACCATCAATACTGCGCGGATAACGCCA
GAACATCCGGAATTATATGCCAAAATTGGCTATATGCCCGTCAGTATTGATGTATTAGCCCAACAAGTCAATTTACCTGT
TGATACCTTATTAGTACAGCTTTTAACCTTGGAATTGCAAGACTTGATTGTTGCTGAAAATGGATTATATCAGCGCAAAT
AA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A849CTM5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

60.811

99.196

0.603

  dprA Glaesserella parasuis strain SC1401

53.143

93.834

0.499

  dprA Vibrio cholerae strain A1552

45.722

100

0.458

  dprA Vibrio campbellii strain DS40M4

45.405

99.196

0.45

  dprA Legionella pneumophila strain ERS1305867

39.623

99.464

0.394


Multiple sequence alignment