Detailed information NTG0032415

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: SMUNN2025_RS05075
• Genome accession: NC_013928
• Coordinates: 1023063..1023743 (+)
• Length: 226 a.a.
• NCBI ID: WP_002262284.1
• Uniprot ID: -
• Organism: Streptococcus mutans NN2025
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1018063..1028743

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMUNN2025_RS05050 (SmuNN2025_0975)	-	1018924..1019256 (+)	333	WP_002262279.1	putative DNA-binding protein	-
SMUNN2025_RS05055 (SmuNN2025_0976)	ffh	1019369..1020919 (+)	1551	WP_002264257.1	signal recognition particle protein	-
SMUNN2025_RS10745	-	1021242..1021466 (+)	225	WP_153019454.1	hypothetical protein	-
SMUNN2025_RS05065 (SmuNN2025_0978)	-	1021563..1022231 (+)	669	WP_012997778.1	SatD family protein	-
SMUNN2025_RS05070 (SmuNN2025_0979)	-	1022228..1022965 (+)	738	WP_012997779.1	DUF3307 domain-containing protein	-
SMUNN2025_RS05075 (SmuNN2025_0980)	radC	1023063..1023743 (+)	681	WP_002262284.1	RadC family protein	Machinery gene
SMUNN2025_RS05080 (SmuNN2025_0981)	-	1023740..1024435 (-)	696	WP_012997780.1	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	-
SMUNN2025_RS05085 (SmuNN2025_0982)	-	1024459..1025100 (-)	642	WP_002262286.1	redox-sensing transcriptional repressor Rex	-
SMUNN2025_RS05090 (SmuNN2025_0983)	-	1025530..1025877 (-)	348	WP_002265028.1	DUF1831 domain-containing protein	-
SMUNN2025_RS05095 (SmuNN2025_0984)	-	1025879..1026997 (-)	1119	WP_002262288.1	cysteine desulfurase family protein	-
SMUNN2025_RS05100 (SmuNN2025_0985)	-	1027001..1027981 (-)	981	WP_002263830.1	ribose-phosphate diphosphokinase	-
SMUNN2025_RS05105 (SmuNN2025_0986)	-	1028084..1028650 (-)	567	WP_002265026.1	CYTH domain-containing protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 25949.01 Da
• Isoelectric Point: 7.4741

>NTDB_id=32415 SMUNN2025_RS05075 WP_002262284.1 1023063..1023743(+) (radC) [Streptococcus mutans NN2025]
MYSIHSAKEALLPRERLMTYGPESLSNQELLAILLRTGTKKEHVLNLSIKILNGLDSLADFRSLSLEELQEIEGIGQVRS
VEIKAMLELSKRINQAEYNFKERILSSERLAKIMMSELGDKRQEHLIAIYLDTQNRVIKKQVIFIGSVRRSVAEPREILH
YACKSMATSLIIVHNHPSGSTYPSENDLRFTEKIKRSCDDLGIVFLDHIIVGKKEYYSFREETDLV

Nucleotide

• Length: 681 bp

>NTDB_id=32415 SMUNN2025_RS05075 WP_002262284.1 1023063..1023743(+) (radC) [Streptococcus mutans NN2025]
ATGTATTCAATCCATTCTGCAAAAGAAGCACTATTGCCTAGAGAACGTCTCATGACTTATGGTCCTGAAAGTTTGAGTAA
TCAAGAATTATTGGCTATATTATTGCGAACTGGTACTAAAAAGGAACATGTTCTCAATCTCTCAATAAAAATTTTAAATG
GTCTAGATAGCTTGGCCGATTTTCGCAGCTTATCTTTAGAAGAACTGCAGGAAATTGAAGGAATCGGTCAAGTACGATCA
GTAGAAATTAAAGCTATGCTGGAATTGTCCAAAAGAATCAATCAAGCTGAATACAATTTTAAAGAACGTATTTTAAGCAG
CGAACGTTTAGCTAAAATAATGATGAGTGAATTAGGCGATAAGAGACAGGAACACCTTATTGCTATATATCTTGACACTC
AAAATCGTGTGATAAAAAAACAAGTCATTTTTATTGGCAGCGTCAGACGATCTGTTGCTGAACCCCGAGAAATCCTTCAT
TATGCTTGTAAAAGTATGGCAACATCACTTATTATTGTCCATAATCATCCTTCAGGTTCAACTTATCCAAGCGAGAATGA
CCTGCGATTTACAGAAAAAATAAAACGATCCTGTGATGATTTAGGAATCGTCTTTTTAGATCATATTATTGTCGGGAAAA
AAGAATATTACAGTTTTCGTGAGGAAACAGATCTTGTTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (106-222)

• UPF0758 N-terminal (UPF0758_N) (5-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus gordonii str. Challis substr. CH1	60.793	100	0.611
radC	Streptococcus pneumoniae TIGR4	58.407	100	0.584
radC	Streptococcus pneumoniae R6	57.965	100	0.58
radC	Streptococcus pneumoniae D39	57.965	100	0.58
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	43.81	92.92	0.407