Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EEB07_RS07195 Genome accession   NZ_CP033576
Coordinates   1371063..1371752 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain NY12-2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1366063..1376752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEB07_RS07160 (EEB07_07160) - 1366261..1366743 (-) 483 WP_022553865.1 flagellar protein FlgN -
  EEB07_RS07165 (EEB07_07165) flgM 1366758..1367024 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  EEB07_RS07170 (EEB07_07170) - 1367094..1367513 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  EEB07_RS07175 (EEB07_07175) comFC 1367587..1368276 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  EEB07_RS07180 (EEB07_07180) - 1368282..1368566 (-) 285 WP_003151389.1 competence protein ComFB -
  EEB07_RS07185 (EEB07_07185) comFA 1368624..1370009 (-) 1386 WP_123117468.1 DEAD/DEAH box helicase Machinery gene
  EEB07_RS07190 (EEB07_07190) - 1370117..1370965 (-) 849 WP_003151387.1 DegV family protein -
  EEB07_RS07195 (EEB07_07195) degU 1371063..1371752 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EEB07_RS07200 (EEB07_07200) degS 1371829..1372992 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  EEB07_RS07205 (EEB07_07205) - 1373215..1373862 (+) 648 WP_007614107.1 YigZ family protein -
  EEB07_RS07210 (EEB07_07210) - 1373867..1375081 (+) 1215 WP_123117469.1 LCP family protein -
  EEB07_RS07215 (EEB07_07215) - 1375180..1376256 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=324048 EEB07_RS07195 WP_003219701.1 1371063..1371752(-) (degU) [Bacillus velezensis strain NY12-2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=324048 EEB07_RS07195 WP_003219701.1 1371063..1371752(-) (degU) [Bacillus velezensis strain NY12-2]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment