Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EEB07_RS07175 Genome accession   NZ_CP033576
Coordinates   1367587..1368276 (-) Length   229 a.a.
NCBI ID   WP_199803302.1    Uniprot ID   -
Organism   Bacillus velezensis strain NY12-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362587..1373276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEB07_RS07140 (EEB07_07140) fliW 1362678..1363109 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  EEB07_RS07145 (EEB07_07145) - 1363139..1363708 (-) 570 WP_003151397.1 DUF6470 family protein -
  EEB07_RS07150 (EEB07_07150) flgL 1363799..1364716 (-) 918 WP_065180520.1 flagellar hook-associated protein FlgL -
  EEB07_RS07155 (EEB07_07155) flgK 1364728..1366245 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  EEB07_RS07160 (EEB07_07160) - 1366261..1366743 (-) 483 WP_022553865.1 flagellar protein FlgN -
  EEB07_RS07165 (EEB07_07165) flgM 1366758..1367024 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  EEB07_RS07170 (EEB07_07170) - 1367094..1367513 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  EEB07_RS07175 (EEB07_07175) comFC 1367587..1368276 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  EEB07_RS07180 (EEB07_07180) - 1368282..1368566 (-) 285 WP_003151389.1 competence protein ComFB -
  EEB07_RS07185 (EEB07_07185) comFA 1368624..1370009 (-) 1386 WP_123117468.1 DEAD/DEAH box helicase Machinery gene
  EEB07_RS07190 (EEB07_07190) - 1370117..1370965 (-) 849 WP_003151387.1 DegV family protein -
  EEB07_RS07195 (EEB07_07195) degU 1371063..1371752 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EEB07_RS07200 (EEB07_07200) degS 1371829..1372992 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25332.01 Da        Isoelectric Point: 8.2927

>NTDB_id=324046 EEB07_RS07175 WP_199803302.1 1367587..1368276(-) (comFC) [Bacillus velezensis strain NY12-2]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=324046 EEB07_RS07175 WP_199803302.1 1367587..1368276(-) (comFC) [Bacillus velezensis strain NY12-2]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
AGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment