Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EEB07_RS07185 Genome accession   NZ_CP033576
Coordinates   1368624..1370009 (-) Length   461 a.a.
NCBI ID   WP_123117468.1    Uniprot ID   -
Organism   Bacillus velezensis strain NY12-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1363624..1375009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEB07_RS07150 (EEB07_07150) flgL 1363799..1364716 (-) 918 WP_065180520.1 flagellar hook-associated protein FlgL -
  EEB07_RS07155 (EEB07_07155) flgK 1364728..1366245 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  EEB07_RS07160 (EEB07_07160) - 1366261..1366743 (-) 483 WP_022553865.1 flagellar protein FlgN -
  EEB07_RS07165 (EEB07_07165) flgM 1366758..1367024 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  EEB07_RS07170 (EEB07_07170) - 1367094..1367513 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  EEB07_RS07175 (EEB07_07175) comFC 1367587..1368276 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  EEB07_RS07180 (EEB07_07180) - 1368282..1368566 (-) 285 WP_003151389.1 competence protein ComFB -
  EEB07_RS07185 (EEB07_07185) comFA 1368624..1370009 (-) 1386 WP_123117468.1 DEAD/DEAH box helicase Machinery gene
  EEB07_RS07190 (EEB07_07190) - 1370117..1370965 (-) 849 WP_003151387.1 DegV family protein -
  EEB07_RS07195 (EEB07_07195) degU 1371063..1371752 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EEB07_RS07200 (EEB07_07200) degS 1371829..1372992 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  EEB07_RS07205 (EEB07_07205) - 1373215..1373862 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52444.86 Da        Isoelectric Point: 10.0818

>NTDB_id=324047 EEB07_RS07185 WP_123117468.1 1368624..1370009(-) (comFA) [Bacillus velezensis strain NY12-2]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNGYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKKAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVDVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=324047 EEB07_RS07185 WP_123117468.1 1368624..1370009(-) (comFA) [Bacillus velezensis strain NY12-2]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACGGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGAAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTATGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGCTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629

Multiple sequence alignment