Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   SMUNN2025_RS01680 Genome accession   NC_013928
Coordinates   345771..346469 (+) Length   232 a.a.
NCBI ID   WP_002263491.1    Uniprot ID   Q8DSH0
Organism   Streptococcus mutans NN2025     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 340771..351469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS01660 (SmuNN2025_0313) gatC 340961..341263 (+) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SMUNN2025_RS01665 (SmuNN2025_0314) gatA 341263..342729 (+) 1467 WP_002271770.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SMUNN2025_RS01670 (SmuNN2025_0315) gatB 342729..344168 (+) 1440 WP_002281592.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  SMUNN2025_RS10775 - 344307..344720 (+) 414 Protein_310 transposase -
  SMUNN2025_RS10605 - 344713..345666 (+) 954 Protein_311 reverse transcriptase domain-containing protein -
  SMUNN2025_RS01680 (SmuNN2025_0319) scnR 345771..346469 (+) 699 WP_002263491.1 response regulator transcription factor Regulator
  SMUNN2025_RS01685 (SmuNN2025_0320) - 346487..347866 (+) 1380 WP_012997586.1 sensor histidine kinase -
  SMUNN2025_RS01695 (SmuNN2025_0321) - 348452..349701 (-) 1250 Protein_314 ISL3-like element ISSmu2 family transposase -
  SMUNN2025_RS01700 (SmuNN2025_0322) - 349976..350134 (+) 159 WP_002268660.1 lacticin 481 family lantibiotic -
  SMUNN2025_RS01705 (SmuNN2025_0323) - 350161..350313 (+) 153 WP_002269377.1 lacticin 481 family lantibiotic -
  SMUNN2025_RS01710 (SmuNN2025_0324) - 350353..350508 (+) 156 WP_002296231.1 lacticin 481 family lantibiotic -
  SMUNN2025_RS09965 (SmuNN2025_0325) - 350702..350863 (+) 162 WP_002268661.1 type A2 lanthipeptide -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26106.25 Da        Isoelectric Point: 6.3461

>NTDB_id=32389 SMUNN2025_RS01680 WP_002263491.1 345771..346469(+) (scnR) [Streptococcus mutans NN2025]
MSFESQLLKKHILIVDDDTSLNQSIKEVLMSRGFNNISSAYSIDEGIDIFSVSKIDLIILDVMLPDGEGYLLAKYIRKSS
DVPILFLTAKNSPDDEIKGLDSGGDDFVTKPFLPKTLSYRIIALLRRSYKGESELIELTFCTIDLNNASVLKGNEHLSLT
PTEIQILRKLYVNKNHIVSTEAICDAVWGLENFGYEKSLMVHIRNIREKIEKNSSKPVHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=32389 SMUNN2025_RS01680 WP_002263491.1 345771..346469(+) (scnR) [Streptococcus mutans NN2025]
GTGTCTTTTGAATCACAATTATTGAAAAAGCATATCCTAATCGTAGATGATGATACATCATTGAACCAGTCCATCAAAGA
GGTTTTGATGAGTCGAGGGTTTAACAATATCAGTTCTGCCTATAGTATAGATGAAGGGATTGATATTTTTTCGGTATCAA
AGATTGATTTGATCATACTGGATGTCATGTTGCCCGATGGGGAAGGTTATTTATTGGCCAAATACATTCGAAAATCGTCA
GATGTCCCTATTTTATTTTTAACCGCAAAAAATAGTCCCGATGATGAAATCAAAGGACTTGATTCAGGAGGAGATGATTT
TGTCACCAAACCATTTCTTCCCAAGACCCTGTCTTATAGGATTATAGCCTTACTGAGGCGATCCTACAAAGGTGAATCTG
AACTTATCGAACTTACTTTCTGCACCATTGATTTAAATAATGCCAGTGTTTTAAAAGGCAATGAACATCTATCACTGACC
CCAACAGAAATTCAGATTCTTCGCAAACTTTATGTCAATAAAAACCACATCGTCTCCACAGAAGCGATTTGCGATGCGGT
GTGGGGACTTGAAAACTTTGGATACGAAAAATCATTAATGGTACATATCCGCAATATCAGAGAAAAAATCGAGAAAAACT
CCTCAAAGCCAGTGCATCTCATTACAGTCAAGGGTCTCGGGTATAAGCTGGTCATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DSH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.411

96.552

0.409
  vicR Streptococcus mutans UA159

37.826

99.138

0.375
  micA Streptococcus pneumoniae Cp1015

36.842

98.276

0.362

Multiple sequence alignment