Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CNQ82_RS00885 Genome accession   NZ_CP033460
Coordinates   172199..172717 (-) Length   172 a.a.
NCBI ID   WP_123143659.1    Uniprot ID   -
Organism   Staphylococcus debuckii strain SDB 2975     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 167199..177717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ82_RS00860 (CNQ82_00860) - 167656..168822 (+) 1167 WP_123143655.1 ArgE/DapE family deacylase -
  CNQ82_RS00865 (CNQ82_00865) - 168881..169474 (-) 594 WP_123143656.1 histidine phosphatase family protein -
  CNQ82_RS00870 (CNQ82_00870) - 169699..170292 (-) 594 WP_123143657.1 hypothetical protein -
  CNQ82_RS00875 (CNQ82_00875) - 170843..171061 (-) 219 WP_123143658.1 hypothetical protein -
  CNQ82_RS00880 (CNQ82_00880) rpsR 171900..172142 (-) 243 WP_012664058.1 30S ribosomal protein S18 -
  CNQ82_RS00885 (CNQ82_00885) ssbA 172199..172717 (-) 519 WP_123143659.1 single-stranded DNA-binding protein Machinery gene
  CNQ82_RS00890 (CNQ82_00890) rpsF 172739..173035 (-) 297 WP_095107129.1 30S ribosomal protein S6 -
  CNQ82_RS00895 (CNQ82_00895) - 173181..174206 (-) 1026 WP_123143660.1 thermonuclease family protein -
  CNQ82_RS00900 (CNQ82_00900) - 174362..174619 (+) 258 WP_123143661.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  CNQ82_RS00905 (CNQ82_00905) - 174613..174951 (+) 339 WP_095107133.1 type II toxin-antitoxin system PemK/MazF family toxin -
  CNQ82_RS00910 (CNQ82_00910) argF 175162..176166 (+) 1005 WP_123143662.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18986.61 Da        Isoelectric Point: 5.2149

>NTDB_id=323841 CNQ82_RS00885 WP_123143659.1 172199..172717(-) (ssbA) [Staphylococcus debuckii strain SDB 2975]
MLNRVVLVGRLTRDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGGQQSGGGNNQFQDYGQSYGGQQQGQNTSSYQNSSKSGQSDNPFANAN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=323841 CNQ82_RS00885 WP_123143659.1 172199..172717(-) (ssbA) [Staphylococcus debuckii strain SDB 2975]
ATGCTTAACAGAGTTGTATTAGTAGGACGTTTAACAAGAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACCTTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAATGTAAACAATTATTTGTTTAAAGGTAGTCTAGCCGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGACGTCGTATTTTTGTGACAGAAGTTGTATGTGATAGTGTTCAATTCCTTGAACCTAAATC
ACAAAATCAACGTCACGGCGGTCAACAATCTGGAGGCGGTAATAACCAATTCCAAGATTATGGTCAAAGTTACGGTGGAC
AACAACAAGGTCAAAATACGTCATCTTATCAAAATTCATCAAAATCTGGACAATCTGATAACCCATTTGCAAATGCAAAC
GGCCCGATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.628

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

55.114

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

63.953

0.366
  ssb Vibrio cholerae strain A1552

34.831

100

0.36

Multiple sequence alignment