Detailed information NTG0323794

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EEA47_RS06225
• Genome accession: NZ_CP033457
• Coordinates: 1325668..1326537 (+)
• Length: 289 a.a.
• NCBI ID: WP_012841418.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain SNU_SP1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1320668..1331537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EEA47_RS06205 (EEA47_06425)	nadC	1321036..1321923 (+)	888	WP_005386616.1	carboxylating nicotinate-nucleotide diphosphorylase	-
EEA47_RS06210 (EEA47_06430)	-	1322186..1322671 (+)	486	WP_005386619.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
EEA47_RS06215 (EEA47_06435)	pilB	1322671..1324356 (+)	1686	WP_268207500.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EEA47_RS06220 (EEA47_06440)	pilC	1324380..1325603 (+)	1224	WP_149192422.1	type II secretion system F family protein	Machinery gene
EEA47_RS06225 (EEA47_06445)	pilD	1325668..1326537 (+)	870	WP_012841418.1	prepilin peptidase	Machinery gene
EEA47_RS06230 (EEA47_06450)	coaE	1326538..1327152 (+)	615	WP_017635920.1	dephospho-CoA kinase	-
EEA47_RS06235 (EEA47_06455)	zapD	1327180..1327920 (+)	741	WP_005373086.1	cell division protein ZapD	-
EEA47_RS06240 (EEA47_06460)	yacG	1328079..1328273 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
EEA47_RS06245 (EEA47_06465)	rplS	1329253..1329606 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
EEA47_RS06250 (EEA47_06470)	trmD	1329648..1330409 (-)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
EEA47_RS06255 (EEA47_06475)	rimM	1330437..1330985 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
EEA47_RS06260 (EEA47_06480)	rpsP	1331015..1331263 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32523.70 Da
• Isoelectric Point: 7.0195

>NTDB_id=323794 EEA47_RS06225 WP_012841418.1 1325668..1326537(+) (pilD) [Vibrio alginolyticus strain SNU_SP1]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=323794 EEA47_RS06225 WP_012841418.1 1325668..1326537(+) (pilD) [Vibrio alginolyticus strain SNU_SP1]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAGCTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTAGATACGATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.551	95.502	0.464