Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FH040_RS20455 Genome accession   NZ_CP040927
Coordinates   4199348..4199884 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain YY76-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4194348..4204884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH040_RS20440 (FH040_20445) - 4194367..4196400 (-) 2034 WP_000807722.1 hypothetical protein -
  FH040_RS20445 (FH040_20450) - 4196417..4197955 (-) 1539 WP_001333349.1 site-specific integrase -
  FH040_RS20450 (FH040_20455) - 4197942..4199189 (-) 1248 WP_000414651.1 site-specific integrase -
  FH040_RS20455 (FH040_20460) ssb 4199348..4199884 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FH040_RS20460 (FH040_20465) uvrA 4200138..4202960 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  FH040_RS20465 (FH040_20470) yjbR 4202995..4203351 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FH040_RS20470 (FH040_20475) yjbQ 4203355..4203771 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FH040_RS20475 (FH040_20480) aphA 4203882..4204595 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=323778 FH040_RS20455 WP_000168305.1 4199348..4199884(-) (ssb) [Escherichia coli strain YY76-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=323778 FH040_RS20455 WP_000168305.1 4199348..4199884(-) (ssb) [Escherichia coli strain YY76-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489