Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   FHI56_RS11855 Genome accession   NZ_CP040804
Coordinates   523077..523826 (-) Length   249 a.a.
NCBI ID   WP_013991120.1    Uniprot ID   A0ABT7LRP2
Organism   Streptococcus salivarius strain LAB813     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 518077..528826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS03750 (FHI56_03750) - 519451..521196 (+) 1746 WP_149561182.1 ABC transporter ATP-binding protein -
  FHI56_RS03755 (FHI56_03755) - 521356..521586 (+) 231 WP_014632652.1 Blp family class II bacteriocin -
  FHI56_RS11630 - 522075..522242 (+) 168 WP_013991122.1 hypothetical protein -
  FHI56_RS11975 (FHI56_03760) - 522589..522990 (+) 402 WP_083306939.1 hypothetical protein -
  FHI56_RS11855 comD/comD3 523077..523826 (-) 750 WP_013991120.1 sensor histidine kinase Regulator
  FHI56_RS03770 (FHI56_03770) comE/blpR 524408..525148 (-) 741 WP_013991119.1 response regulator transcription factor Regulator
  FHI56_RS03775 (FHI56_03775) - 525407..525472 (+) 66 Protein_503 ComC/BlpC family leader-containing pheromone/bacteriocin -
  FHI56_RS03780 (FHI56_03780) - 525481..525873 (+) 393 WP_003094909.1 hypothetical protein -
  FHI56_RS03785 (FHI56_03785) - 526342..526638 (+) 297 WP_013991117.1 bacteriocin immunity protein -
  FHI56_RS03790 (FHI56_03790) - 526856..527221 (+) 366 WP_013991116.1 hypothetical protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28636.85 Da        Isoelectric Point: 5.1411

>NTDB_id=323630 FHI56_RS11855 WP_013991120.1 523077..523826(-) (comD/comD3) [Streptococcus salivarius strain LAB813]
MVIYLVLFFIMLIFLDRNIRATIQSQLDFQKDIQLSHLTNYNKQIENLYQSVRSFRHDYANILTTLKLGIDQNDMAIVKE
VYDSVLKDSDKHLKSKTFDLTRLINIEDNTIKSLLAAKFLEAEENNIDISLDIPETIKLEGMEMVDFITVISIFLDNAME
ASIQSDIPKMHIGYFNHGNKQIFIVQNSTQEEFIPISSLFERGVSSKGDHRGIGLANVRNILDNYQNISLKTESMTFAFT
QELNISKKA

Nucleotide


Download         Length: 750 bp        

>NTDB_id=323630 FHI56_RS11855 WP_013991120.1 523077..523826(-) (comD/comD3) [Streptococcus salivarius strain LAB813]
GTGGTTATTTATCTAGTCTTGTTCTTTATCATGCTTATCTTCTTAGATAGAAATATCCGAGCAACAATACAAAGTCAGTT
GGACTTTCAAAAAGATATTCAACTATCGCATCTTACGAATTATAACAAACAGATTGAAAACCTCTATCAGTCGGTTCGAA
GTTTTCGTCATGATTATGCCAATATTTTAACAACACTCAAACTTGGTATCGATCAAAATGATATGGCTATTGTAAAAGAA
GTCTACGACTCAGTTCTAAAAGATTCCGATAAGCATTTAAAATCGAAAACATTTGATTTAACTCGCTTAATAAACATAGA
AGATAACACTATCAAAAGCCTACTTGCAGCTAAGTTCCTAGAGGCAGAAGAAAATAACATTGATATCTCCTTAGATATTC
CTGAAACTATCAAACTCGAGGGTATGGAGATGGTCGATTTTATTACTGTAATATCTATCTTTCTAGACAATGCGATGGAA
GCATCGATTCAGTCTGACATACCAAAAATGCATATTGGCTACTTCAATCATGGTAATAAGCAAATCTTTATTGTCCAAAA
CTCAACCCAGGAAGAATTTATTCCTATCTCATCACTTTTTGAGAGAGGTGTCTCCAGTAAAGGGGATCATCGCGGTATAG
GTTTGGCCAACGTTAGGAATATATTAGACAACTATCAAAATATTTCTTTAAAAACTGAAAGTATGACTTTTGCATTTACA
CAGGAACTTAATATATCGAAAAAAGCTTGA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(142-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

42.798

97.59

0.418
  comD/comD2 Streptococcus equinus JB1

40.329

97.59

0.394
  comD/blpH Streptococcus mutans UA159

39.592

98.394

0.39
  comD/comD1 Streptococcus equinus JB1

39.394

92.771

0.365