Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DCD52_RS18640 Genome accession   NZ_CP033396
Coordinates   3521712..3522308 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain 015625     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3516712..3527308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCD52_RS18625 (DCD52_19390) helD 3516920..3518974 (-) 2055 WP_002898429.1 DNA helicase IV -
  DCD52_RS18630 (DCD52_19395) - 3519099..3519545 (+) 447 WP_002898425.1 YccF domain-containing protein -
  DCD52_RS18635 (DCD52_19400) yccS 3519563..3521698 (+) 2136 WP_002898422.1 YccS family putative transporter -
  DCD52_RS18640 (DCD52_19405) sxy/tfoX 3521712..3522308 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  DCD52_RS18645 (DCD52_19415) sulA 3522657..3523166 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  DCD52_RS18650 (DCD52_19420) ompA 3523519..3524589 (+) 1071 WP_062954987.1 porin OmpA -
  DCD52_RS18655 (DCD52_19425) matP 3524721..3525173 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  DCD52_RS18660 (DCD52_19430) - 3525359..3527116 (+) 1758 WP_002898401.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=323615 DCD52_RS18640 WP_004150836.1 3521712..3522308(-) (sxy/tfoX) [Klebsiella pneumoniae strain 015625]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=323615 DCD52_RS18640 WP_004150836.1 3521712..3522308(-) (sxy/tfoX) [Klebsiella pneumoniae strain 015625]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment