Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   D5285_RS02080 Genome accession   NZ_CP033389
Coordinates   384478..384924 (-) Length   148 a.a.
NCBI ID   WP_020450096.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CBMAI 1303     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 379478..389924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5285_RS02055 (D5285_02055) - 380085..380960 (-) 876 WP_020450091.1 transporter substrate-binding domain-containing protein -
  D5285_RS02060 (D5285_02060) - 381144..381695 (+) 552 WP_020450092.1 NAD(P)H-dependent oxidoreductase -
  D5285_RS02065 (D5285_02065) - 381791..382516 (+) 726 WP_020450093.1 AAA family ATPase -
  D5285_RS02070 (D5285_02070) - 382586..384022 (+) 1437 WP_020450094.1 glycoside hydrolase family 1 protein -
  D5285_RS02075 (D5285_02075) nin/comJ 384062..384460 (-) 399 WP_023855672.1 competence protein ComJ Regulator
  D5285_RS02080 (D5285_02080) nucA/comI 384478..384924 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D5285_RS22855 - 385227..385397 (+) 171 WP_023855671.1 hypothetical protein -
  D5285_RS02085 (D5285_02085) - 385403..386206 (+) 804 WP_025810788.1 protein kinase -
  D5285_RS02090 (D5285_02090) - 386611..387351 (-) 741 WP_020450098.1 ribonuclease YeeF family protein -
  D5285_RS02095 (D5285_02095) - 387755..389809 (+) 2055 WP_020450099.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16280.32 Da        Isoelectric Point: 5.7093

>NTDB_id=323536 D5285_RS02080 WP_020450096.1 384478..384924(-) (nucA/comI) [Bacillus paralicheniformis strain CBMAI 1303]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=323536 D5285_RS02080 WP_020450096.1 384478..384924(-) (nucA/comI) [Bacillus paralicheniformis strain CBMAI 1303]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635

Multiple sequence alignment