Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D5285_RS02455 Genome accession   NZ_CP033389
Coordinates   483823..484776 (+) Length   317 a.a.
NCBI ID   WP_020450170.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CBMAI 1303     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478823..489776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5285_RS02440 (D5285_02440) - 478871..480298 (+) 1428 WP_020450167.1 HAMP domain-containing sensor histidine kinase -
  D5285_RS23565 - 480330..481283 (-) 954 WP_373367326.1 methyl-accepting chemotaxis protein -
  D5285_RS23570 - 481284..482063 (-) 780 Protein_455 MCP four helix bundle domain-containing protein -
  D5285_RS02450 (D5285_02450) - 482184..483545 (-) 1362 WP_020450169.1 aspartate kinase -
  D5285_RS02455 (D5285_02455) ceuB 483823..484776 (+) 954 WP_020450170.1 ABC transporter permease Machinery gene
  D5285_RS02460 (D5285_02460) - 484766..485710 (+) 945 WP_020450171.1 iron chelate uptake ABC transporter family permease subunit -
  D5285_RS02465 (D5285_02465) - 485710..486468 (+) 759 WP_020450172.1 ABC transporter ATP-binding protein -
  D5285_RS02470 (D5285_02470) - 486483..487430 (+) 948 WP_020450173.1 siderophore ABC transporter substrate-binding protein -
  D5285_RS02475 (D5285_02475) - 487610..489031 (-) 1422 WP_020450174.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35107.47 Da        Isoelectric Point: 10.1004

>NTDB_id=323537 D5285_RS02455 WP_020450170.1 483823..484776(+) (ceuB) [Bacillus paralicheniformis strain CBMAI 1303]
MKLRYLLLMLIILSFSSIFIGVKELSPLDLFRLNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=323537 D5285_RS02455 WP_020450170.1 483823..484776(+) (ceuB) [Bacillus paralicheniformis strain CBMAI 1303]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCGTTCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGACCTTTTCCGCTTGAACGAGGACGAAATTCAAACGCTTTACATAAGCAGAATCCCGCGCTTGATCAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATCTGCGGGCTGATCATGCAGCAGCTGACGCGCAATAAATTTGTTTCACCGACGACCGCT
GGAACGATGGATTGGGCGAGGCTCGGCGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTCAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGCTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTCGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCCACTTTCATGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTTGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCTATTAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGACTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGCACG
CTTCCCTTTTTGGGTTTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCACAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.899

99.685

0.517

Multiple sequence alignment