Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D5285_RS00265 Genome accession   NZ_CP033389
Coordinates   48654..48944 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CBMAI 1303     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 43654..53944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5285_RS00225 (D5285_00225) - 43677..44006 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  D5285_RS00230 (D5285_00230) - 44018..44458 (+) 441 WP_020449792.1 YaaR family protein -
  D5285_RS00235 (D5285_00235) holB 44470..45459 (+) 990 WP_020449793.1 DNA polymerase III subunit delta' -
  D5285_RS00240 (D5285_00240) - 45462..46289 (+) 828 WP_020449794.1 stage 0 sporulation family protein -
  D5285_RS00245 (D5285_00245) yabA 46304..46666 (+) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  D5285_RS00250 (D5285_00250) - 46731..47474 (+) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  D5285_RS00255 (D5285_00255) - 47461..47754 (+) 294 WP_020449797.1 GIY-YIG nuclease family protein -
  D5285_RS00260 (D5285_00260) rsmI 47729..48604 (+) 876 WP_041817399.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D5285_RS00265 (D5285_00265) abrB 48654..48944 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D5285_RS00270 (D5285_00270) metG 49452..51440 (+) 1989 WP_020449799.1 methionine--tRNA ligase -
  D5285_RS00275 (D5285_00275) - 51524..52291 (+) 768 WP_020449800.1 TatD family hydrolase -
  D5285_RS00280 (D5285_00280) - 52536..53732 (+) 1197 WP_020449801.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=323531 D5285_RS00265 WP_085959887.1 48654..48944(-) (abrB) [Bacillus paralicheniformis strain CBMAI 1303]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=323531 D5285_RS00265 WP_085959887.1 48654..48944(-) (abrB) [Bacillus paralicheniformis strain CBMAI 1303]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment