Detailed information NTG0323489

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: FHD66_RS08015
• Genome accession: NZ_CP040801
• Coordinates: 1685221..1685907 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692876.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain S15
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1680221..1690907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FHD66_RS07970 (FHD66_08140)	rpmA	1680992..1681276 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
FHD66_RS07975 (FHD66_08145)	-	1681288..1681608 (-)	321	WP_000633690.1	ribosomal-processing cysteine protease Prp	-
FHD66_RS07980 (FHD66_08150)	rplU	1681614..1681922 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
FHD66_RS07985 (FHD66_08155)	mreD	1682158..1682688 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
FHD66_RS07990 (FHD66_08160)	mreC	1682688..1683530 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
FHD66_RS07995 (FHD66_08165)	-	1683729..1683848 (-)	120	WP_000840603.1	hypothetical protein	-
FHD66_RS08000 (FHD66_08170)	-	1683922..1684395 (-)	474	WP_001236737.1	DUF4930 family protein	-
FHD66_RS08005 (FHD66_08175)	-	1684555..1684752 (+)	198	WP_000025835.1	hypothetical protein	-
FHD66_RS08010 (FHD66_08180)	-	1684869..1685153 (-)	285	WP_000171863.1	hypothetical protein	-
FHD66_RS08015 (FHD66_08185)	ysxA/radC	1685221..1685907 (-)	687	WP_000692876.1	RadC family protein	Machinery gene
FHD66_RS08020 (FHD66_08190)	-	1685904..1686611 (-)	708	WP_000261111.1	prepilin peptidase	-
FHD66_RS08025 (FHD66_08195)	-	1686873..1688144 (-)	1272	WP_001108341.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
FHD66_RS08030 (FHD66_08200)	-	1688157..1690787 (-)	2631	WP_000425338.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25297.21 Da
• Isoelectric Point: 6.7572

>NTDB_id=323489 FHD66_RS08015 WP_000692876.1 1685221..1685907(-) (ysxA/radC) [Staphylococcus aureus strain S15]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=323489 FHD66_RS08015 WP_000692876.1 1685221..1685907(-) (ysxA/radC) [Staphylococcus aureus strain S15]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377