Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JL719_RS13595 Genome accession   NZ_CP033381
Coordinates   2996147..2996608 (-) Length   153 a.a.
NCBI ID   WP_033158801.1    Uniprot ID   -
Organism   Methylomonas sp. LW13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2991147..3001608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL719_RS13590 (U737_13680) - 2991754..2995554 (-) 3801 WP_129871410.1 response regulator -
  JL719_RS13595 (U737_13685) ssb 2996147..2996608 (-) 462 WP_033158801.1 single-stranded DNA-binding protein Machinery gene
  JL719_RS13600 (U737_13690) - 2996645..2998030 (-) 1386 WP_033158821.1 MFS transporter -
  JL719_RS13605 (U737_13695) - 2998183..2998524 (+) 342 WP_033158802.1 coiled-coil domain-containing protein -
  JL719_RS13610 - 2998538..2998966 (+) 429 WP_033158803.1 hypothetical protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17145.94 Da        Isoelectric Point: 5.7827

>NTDB_id=323468 JL719_RS13595 WP_033158801.1 2996147..2996608(-) (ssb) [Methylomonas sp. LW13]
MLNKVMLIGRLGADPEVRYMPSGDAITTIRLATDRRWKDRQTGERKQETEWHRVVFFSGLAKIAGEYLKKGSQCYVEGRI
RTQKWQGQDGQDRYTTEIVADNMHMLDSKSGGTASYSDNNTPPASSYDNRSSGPSGPQAAPASYDDFDDDIPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=323468 JL719_RS13595 WP_033158801.1 2996147..2996608(-) (ssb) [Methylomonas sp. LW13]
ATGCTAAATAAAGTTATGCTGATCGGCCGCCTCGGCGCCGATCCGGAAGTGCGTTATATGCCGAGTGGCGATGCTATTAC
CACGATACGGTTGGCCACCGATAGACGCTGGAAAGATAGGCAAACCGGCGAGCGCAAGCAAGAAACCGAATGGCACCGGG
TGGTGTTTTTCAGTGGTTTGGCGAAAATCGCCGGCGAATATCTGAAAAAAGGTAGCCAATGTTATGTCGAAGGCCGTATT
CGTACGCAAAAATGGCAAGGTCAGGACGGTCAAGATCGGTACACAACCGAAATCGTTGCCGACAATATGCACATGCTGGA
CAGTAAAAGCGGCGGCACTGCCAGCTACTCGGACAATAATACCCCGCCAGCCAGTAGCTATGACAATCGCTCTTCCGGAC
CTTCAGGCCCACAAGCTGCGCCGGCTTCCTATGACGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.093

100

0.529
  ssb Glaesserella parasuis strain SC1401

45.198

100

0.523
  ssb Neisseria meningitidis MC58

45.087

100

0.51
  ssb Neisseria gonorrhoeae MS11

44.509

100

0.503

Multiple sequence alignment