Detailed information NTG0032344

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: DALK_RS23665
• Genome accession: NC_011768
• Coordinates: 5720029..5720469 (+)
• Length: 146 a.a.
• NCBI ID: WP_015949318.1
• Uniprot ID: B8FNJ8
• Organism: Desulfatibacillum aliphaticivorans
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 5715029..5725469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DALK_RS23620	-	5715327..5715740 (+)	414	WP_043808046.1	hypothetical protein	-
DALK_RS23625 (Dalk_4591)	-	5716464..5716748 (+)	285	WP_015949308.1	hypothetical protein	-
DALK_RS30475 (Dalk_4592)	-	5716749..5716877 (+)	129	WP_015949309.1	hypothetical protein	-
DALK_RS23630 (Dalk_4593)	-	5716874..5717161 (+)	288	WP_015949310.1	hypothetical protein	-
DALK_RS23635 (Dalk_4594)	-	5717161..5717418 (+)	258	WP_015949311.1	hypothetical protein	-
DALK_RS23640 (Dalk_4595)	-	5717411..5717662 (+)	252	WP_015949312.1	hypothetical protein	-
DALK_RS23645 (Dalk_4597)	-	5717783..5718568 (+)	786	WP_015949314.1	PD-(D/E)XK nuclease-like domain-containing protein	-
DALK_RS23650 (Dalk_4598)	-	5718578..5719663 (+)	1086	WP_015949315.1	hypothetical protein	-
DALK_RS23655 (Dalk_4599)	-	5719663..5719857 (+)	195	WP_015949316.1	hypothetical protein	-
DALK_RS23660 (Dalk_4600)	-	5719842..5720045 (+)	204	WP_136360696.1	hypothetical protein	-
DALK_RS23665 (Dalk_4601)	ssb	5720029..5720469 (+)	441	WP_015949318.1	single-stranded DNA-binding protein	Machinery gene
DALK_RS23670 (Dalk_4602)	-	5720548..5720892 (+)	345	WP_015949319.1	hypothetical protein	-
DALK_RS23675 (Dalk_4603)	-	5720934..5721236 (+)	303	WP_136360697.1	hypothetical protein	-
DALK_RS23680 (Dalk_4605)	-	5721365..5721970 (+)	606	WP_015949322.1	hypothetical protein	-
DALK_RS23695 (Dalk_4607)	-	5722582..5722965 (+)	384	WP_015949324.1	hypothetical protein	-
DALK_RS23700 (Dalk_4608)	-	5722965..5723330 (+)	366	WP_015949325.1	hypothetical protein	-
DALK_RS23705 (Dalk_4609)	-	5723330..5723671 (+)	342	WP_015949326.1	hypothetical protein	-
DALK_RS23710 (Dalk_4610)	-	5723661..5723840 (+)	180	WP_015949327.1	hypothetical protein	-
DALK_RS23715 (Dalk_4611)	-	5723837..5724358 (+)	522	WP_015949328.1	hypothetical protein	-
DALK_RS23720 (Dalk_4612)	-	5724355..5724615 (+)	261	WP_015949329.1	hypothetical protein	-
DALK_RS30720 (Dalk_4614)	-	5724891..5725292 (+)	402	WP_015949331.1	DNA N-6-adenine-methyltransferase	-

Sequence

Protein

• Length: 146 a.a.
• Molecular weight: 16264.31 Da
• Isoelectric Point: 7.2763

>NTDB_id=32344 DALK_RS23665 WP_015949318.1 5720029..5720469(+) (ssb) [Desulfatibacillum aliphaticivorans]
MAGLNKVMLIGHLGRDPEMKYAASGLAIANINLATTEKFKGEDRTEWHRIVVFDKLAEICGQYLKKGSQAYFEGRLKTKE
WTDKDGNKRYTTEIVANNMVMLGGRDAGQGRQQRPAQQPTPEPGPSHYDGPPLDDGDDDIPFSRRG

Nucleotide

• Length: 441 bp

>NTDB_id=32344 DALK_RS23665 WP_015949318.1 5720029..5720469(+) (ssb) [Desulfatibacillum aliphaticivorans]
ATGGCAGGACTGAATAAAGTGATGCTGATCGGCCACCTTGGCCGTGACCCGGAAATGAAATACGCCGCCTCCGGGCTGGC
AATCGCCAATATCAACTTGGCGACCACGGAGAAATTCAAGGGTGAGGACCGGACCGAGTGGCATCGGATAGTTGTCTTCG
ACAAACTGGCCGAGATTTGCGGCCAATACCTCAAGAAAGGCTCCCAGGCCTATTTTGAAGGCCGTCTGAAAACCAAGGAA
TGGACCGACAAGGACGGTAACAAAAGGTACACCACGGAGATTGTCGCCAACAACATGGTGATGCTCGGAGGCCGCGACGC
AGGCCAGGGCCGCCAGCAACGGCCGGCGCAGCAACCGACGCCTGAGCCAGGGCCGTCGCACTATGACGGGCCGCCGCTGG
ATGACGGAGACGATGACATCCCTTTTAGTCGAAGGGGTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-102)

3D structure

• AlphaFold DB: B8FNJ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Neisseria gonorrhoeae MS11	45.665	100	0.541
ssb	Neisseria meningitidis MC58	44.509	100	0.527
ssb	Vibrio cholerae strain A1552	43.931	100	0.521
ssb	Glaesserella parasuis strain SC1401	41.667	100	0.514