Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SMI_RS09755 Genome accession   NC_013853
Coordinates   1987161..1987754 (-) Length   197 a.a.
NCBI ID   WP_000273417.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1982161..1992754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS09735 (smi_1926) - 1983463..1984407 (+) 945 WP_000815623.1 magnesium transporter CorA family protein -
  SMI_RS09740 (smi_1927) - 1984419..1985096 (+) 678 WP_000078366.1 DUF1129 domain-containing protein -
  SMI_RS09745 (smi_1928) - 1985389..1986420 (+) 1032 WP_164925574.1 S66 family peptidase -
  SMI_RS09750 (smi_1929) - 1986588..1987151 (-) 564 WP_000166578.1 DNA-3-methyladenine glycosylase I -
  SMI_RS09755 (smi_1930) ruvA 1987161..1987754 (-) 594 WP_000273417.1 Holliday junction branch migration protein RuvA Machinery gene
  SMI_RS09760 (smi_1931) hexB 1987770..1989719 (-) 1950 WP_000018198.1 DNA mismatch repair endonuclease MutL Machinery gene
  SMI_RS09765 (smi_1933) - 1989925..1990365 (+) 441 WP_000861978.1 LytTR family DNA-binding domain-containing protein -
  SMI_RS09770 (smi_1934) - 1990362..1990820 (+) 459 WP_000743981.1 DUF3021 domain-containing protein -
  SMI_RS09775 (smi_1935) nrdI 1990868..1991332 (-) 465 WP_000849614.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  SMI_RS09780 (smi_1936) - 1991410..1991943 (-) 534 WP_164925575.1 ABC transporter permease -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21664.13 Da        Isoelectric Point: 6.2573

>NTDB_id=32339 SMI_RS09755 WP_000273417.1 1987161..1987754(-) (ruvA) [Streptococcus mitis B6]
MYEYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=32339 SMI_RS09755 WP_000273417.1 1987161..1987754(-) (ruvA) [Streptococcus mitis B6]
ATGTACGAATATTTAAAAGGAATCATTACCAAAATCACTGCCAAATACATTGTTCTTGAAACCAACGGTATCGGTTATAT
CCTGCATGTGGCCAATCCCTATGCTTACTCAGGTCAGGTCAATCAAGAAGCTCAGATTTATGTGCATCAAGTCGTGCGTG
AGGACGCTCATCTGCTTTATGGATTTCGCTCAGAAGACGAGAAAAAGCTCTTTCTCAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCCGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAATTCCCTAAAATTGGAAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGGTGGCAGTGCAAGCCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAGGCCATG
CTGGCTCTGGGCTACAAGGCAACAGAACTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Streptococcus pneumoniae R6

98.985

100

0.99
  ruvA Streptococcus pneumoniae D39

98.985

100

0.99
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421

Multiple sequence alignment