Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EB233_RS18660 Genome accession   NZ_CP033361
Coordinates   3862838..3863356 (+) Length   172 a.a.
NCBI ID   WP_027051955.1    Uniprot ID   -
Organism   Mesorhizobium erdmanii strain NZP2014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3857838..3868356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB233_RS18640 (EB233_18960) - 3860452..3860733 (-) 282 WP_064988571.1 hypothetical protein -
  EB233_RS18645 (EB233_18965) - 3861193..3861801 (-) 609 WP_064988572.1 ATP-dependent Clp protease proteolytic subunit -
  EB233_RS18650 (EB233_18970) - 3861823..3862302 (-) 480 WP_064988573.1 SRPBCC domain-containing protein -
  EB233_RS18655 (EB233_18975) - 3862299..3862613 (-) 315 WP_027051956.1 metalloregulator ArsR/SmtB family transcription factor -
  EB233_RS18660 (EB233_18980) ssb 3862838..3863356 (+) 519 WP_027051955.1 single-stranded DNA-binding protein Machinery gene
  EB233_RS18665 (EB233_18985) - 3863486..3863911 (+) 426 WP_064988574.1 OsmC family protein -
  EB233_RS18670 (EB233_18990) - 3863945..3864574 (-) 630 WP_027051953.1 MarC family protein -
  EB233_RS18675 (EB233_18995) - 3864723..3865253 (-) 531 WP_064988575.1 hypothetical protein -
  EB233_RS18680 (EB233_19000) - 3865339..3866169 (+) 831 WP_064988576.1 AraC family transcriptional regulator -
  EB233_RS18685 (EB233_19005) - 3866198..3866821 (-) 624 WP_064988577.1 ParB-like protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18579.53 Da        Isoelectric Point: 7.0226

>NTDB_id=323384 EB233_RS18660 WP_027051955.1 3862838..3863356(+) (ssb) [Mesorhizobium erdmanii strain NZP2014]
MAGSVNKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTEWHNVVIFNEGIAKVAEQYLKKGMKVYV
EGQLQTRKWQDQTGADKYTTEVVLQKFRGELQMLDARGQGEGGQVGGYSGGGSSRGSDFGQSSPNESFNRGGGAPRGGGG
GSSRELDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=323384 EB233_RS18660 WP_027051955.1 3862838..3863356(+) (ssb) [Mesorhizobium erdmanii strain NZP2014]
ATGGCGGGTAGCGTCAACAAGGTCATTCTGGTCGGCAACCTCGGCGCGGATCCGGAGATCCGCCGCCTGAATTCGGGCGA
GCCGGTCGTCAATATCCGCATCGCCACGTCGGAAAGCTGGCGCGACAAGAATTCCGGCGAGCGCAAGGAGAAGACCGAGT
GGCACAATGTCGTCATCTTCAATGAGGGCATCGCCAAGGTGGCCGAGCAGTACCTGAAGAAGGGCATGAAGGTTTATGTC
GAGGGCCAATTGCAGACGCGCAAATGGCAGGACCAGACCGGGGCCGACAAGTACACGACGGAGGTCGTGCTGCAGAAATT
CCGCGGCGAGTTGCAGATGCTCGACGCACGTGGCCAGGGTGAAGGCGGCCAGGTCGGCGGTTATTCCGGCGGCGGCAGCA
GCCGCGGTTCCGATTTCGGCCAGTCCAGCCCGAATGAAAGCTTCAACCGCGGCGGCGGCGCGCCCAGGGGTGGCGGCGGC
GGCTCGTCGCGCGAACTGGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.512
  ssb Vibrio cholerae strain A1552

47.778

100

0.5
  ssb Neisseria gonorrhoeae MS11

38.251

100

0.407
  ssb Neisseria meningitidis MC58

38.251

100

0.407

Multiple sequence alignment