Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DALK_RS07755 Genome accession   NC_011768
Coordinates   1977671..1978153 (+) Length   160 a.a.
NCBI ID   WP_012610632.1    Uniprot ID   B8FAA1
Organism   Desulfatibacillum aliphaticivorans     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1972671..1983153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DALK_RS07735 (Dalk_1493) - 1973243..1973689 (+) 447 WP_012610628.1 CGGC domain-containing protein -
  DALK_RS07740 (Dalk_1494) - 1973788..1975608 (-) 1821 WP_136360582.1 hypothetical protein -
  DALK_RS07745 (Dalk_1495) amrS 1975732..1976745 (-) 1014 WP_012610630.1 AmmeMemoRadiSam system radical SAM enzyme -
  DALK_RS07750 (Dalk_1496) - 1976702..1977508 (-) 807 WP_168161166.1 class I SAM-dependent methyltransferase -
  DALK_RS07755 (Dalk_1497) ssb 1977671..1978153 (+) 483 WP_012610632.1 single-stranded DNA-binding protein Machinery gene
  DALK_RS27705 (Dalk_1498) - 1978499..1981039 (+) 2541 WP_012610633.1 response regulator -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17814.80 Da        Isoelectric Point: 4.8070

>NTDB_id=32336 DALK_RS07755 WP_012610632.1 1977671..1978153(+) (ssb) [Desulfatibacillum aliphaticivorans]
MAGLNKVMLIGNLGRDPEIRYTASGLAIANINLATTERFKGEDRTEWHRVVVFDKLAEICGQYLTKGKQVYFEGRLQTKE
WTDKEGNKRWTTEIIANNMVMLGGRGEGQGPSNYQPRPAQRPAPQNNGYQNNGPADGGYQDDMPGPSYDQGGMDDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=32336 DALK_RS07755 WP_012610632.1 1977671..1978153(+) (ssb) [Desulfatibacillum aliphaticivorans]
ATGGCGGGATTGAATAAAGTAATGCTTATCGGCAACTTAGGCAGAGACCCTGAAATCCGTTACACCGCCAGCGGCCTGGC
CATTGCAAATATCAACCTGGCGACCACCGAAAGGTTCAAAGGCGAAGACAGGACCGAGTGGCACCGGGTCGTGGTCTTTG
ATAAACTGGCGGAGATCTGCGGCCAATACCTCACAAAAGGCAAGCAGGTTTATTTTGAAGGGCGCCTCCAGACCAAGGAG
TGGACCGACAAGGAGGGCAACAAAAGATGGACCACCGAGATTATCGCCAATAATATGGTCATGCTCGGAGGACGCGGGGA
AGGACAAGGCCCTTCCAACTATCAGCCCAGGCCGGCCCAAAGGCCCGCCCCCCAAAACAACGGATATCAAAACAACGGCC
CTGCGGACGGAGGCTACCAGGATGATATGCCCGGACCTTCCTACGACCAGGGCGGTATGGACGATGACGACATCCCCTTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8FAA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.693

100

0.5
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.488
  ssb Glaesserella parasuis strain SC1401

41.758

100

0.475
  ssb Neisseria meningitidis MC58

42.614

100

0.469

Multiple sequence alignment