Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FDP16_RS02670 Genome accession   NZ_CP040798
Coordinates   531194..531859 (+) Length   221 a.a.
NCBI ID   WP_176798476.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526194..536859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS02640 (FDP16_02745) - 526516..526878 (+) 363 WP_101771704.1 S1 RNA-binding domain-containing protein -
  FDP16_RS02645 (FDP16_02750) cysK 527119..528048 (-) 930 WP_176798474.1 cysteine synthase A -
  FDP16_RS02650 (FDP16_02755) - 528149..528781 (-) 633 WP_176798475.1 YigZ family protein -
  FDP16_RS02655 (FDP16_02760) - 528837..529718 (+) 882 Protein_502 DEAD/DEAH box helicase -
  FDP16_RS02660 (FDP16_02765) - 529813..530748 (+) 936 WP_176798270.1 IS30 family transposase -
  FDP16_RS02665 (FDP16_02770) - 530775..531197 (+) 423 Protein_504 helicase-related protein -
  FDP16_RS02670 (FDP16_02775) comFC/cflB 531194..531859 (+) 666 WP_176798476.1 ComF family protein Machinery gene
  FDP16_RS02675 (FDP16_02780) hpf 531941..532483 (+) 543 WP_176798477.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25459.50 Da        Isoelectric Point: 9.5312

>NTDB_id=323280 FDP16_RS02670 WP_176798476.1 531194..531859(+) (comFC/cflB) [Streptococcus sanguinis strain CGMH058]
MTECLLCKVQIEDKSSFLRLFLLKGEGPSCCSTCYQKFERISEEHCPRCFRNGKSDLCTDCKKWEKEGNQVQHQSLFTYN
QAMKAYFSQYKFQGDYALRFVFAKATKNTVKKFREHTIVPIPVSVEKFQVRGFNQVQGILDAGKVAYRNLLEKKDTIAQS
SKTREERLQTQQAFKIRKGVDLPDKILLVDDIYTTGKTLQLAKQILLEAGVKEVLSFSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=323280 FDP16_RS02670 WP_176798476.1 531194..531859(+) (comFC/cflB) [Streptococcus sanguinis strain CGMH058]
ATGACAGAGTGTCTTTTATGCAAAGTGCAAATTGAGGACAAAAGTAGTTTTTTACGCCTTTTTCTATTAAAAGGAGAAGG
ACCAAGCTGCTGCTCCACTTGCTATCAAAAATTTGAACGCATATCTGAAGAGCATTGCCCTCGCTGTTTTCGCAACGGGA
AATCAGATTTATGCACAGATTGCAAAAAGTGGGAGAAAGAAGGGAATCAAGTCCAGCATCAGTCACTATTTACTTATAAT
CAAGCAATGAAGGCTTATTTCAGTCAATACAAGTTTCAGGGAGACTATGCATTGCGCTTTGTATTTGCAAAAGCAACTAA
AAATACAGTCAAAAAGTTTAGAGAGCATACCATTGTTCCGATTCCAGTCAGTGTCGAAAAATTTCAAGTTCGAGGATTTA
ATCAAGTGCAGGGGATTTTAGATGCAGGAAAAGTAGCATATAGAAATCTCTTAGAGAAAAAAGACACCATAGCCCAGTCT
AGCAAGACTCGTGAGGAGCGTCTGCAGACGCAGCAGGCTTTTAAAATTAGGAAAGGAGTTGATTTGCCAGATAAAATTTT
GCTGGTTGATGATATCTATACGACTGGAAAAACCTTGCAATTAGCCAAGCAAATCTTATTGGAAGCCGGTGTGAAAGAAG
TATTGTCATTTTCAATCGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis SK321

47.248

98.643

0.466