Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   FGE23_RS17990 Genome accession   NZ_CP040672
Coordinates   3632261..3633265 (-) Length   334 a.a.
NCBI ID   WP_146277245.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3627261..3638265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS17960 - 3628287..3628943 (-) 657 WP_003152699.1 DUF421 domain-containing protein -
  FGE23_RS17965 - 3629110..3629496 (+) 387 WP_146277243.1 TIGR04086 family membrane protein -
  FGE23_RS17970 yajC 3629550..3629810 (-) 261 WP_003152695.1 preprotein translocase subunit YajC -
  FGE23_RS17975 tgt 3629841..3630986 (-) 1146 WP_007408186.1 tRNA guanosine(34) transglycosylase Tgt -
  FGE23_RS17980 queA 3631014..3632042 (-) 1029 WP_003152692.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FGE23_RS17985 - 3632068..3632268 (-) 201 WP_003152687.1 DUF2905 domain-containing protein -
  FGE23_RS17990 ruvB 3632261..3633265 (-) 1005 WP_146277245.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  FGE23_RS17995 ruvA 3633276..3633881 (-) 606 WP_003152683.1 Holliday junction branch migration protein RuvA Machinery gene
  FGE23_RS18000 - 3634016..3634525 (-) 510 WP_012118093.1 intercompartmental signaling factor BofC -
  FGE23_RS20355 - 3634657..3634776 (-) 120 WP_373364962.1 hypothetical protein -
  FGE23_RS18010 - 3634910..3635503 (-) 594 WP_069013531.1 YhcN/YlaJ family sporulation lipoprotein -
  FGE23_RS18015 safA 3635651..3636841 (-) 1191 WP_146277247.1 spore coat assembly protein SafA -
  FGE23_RS18020 nadA 3636968..3638071 (-) 1104 WP_146277249.1 quinolinate synthase NadA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37197.46 Da        Isoelectric Point: 4.7176

>NTDB_id=323136 FGE23_RS17990 WP_146277245.1 3632261..3633265(-) (ruvB) [Bacillus amyloliquefaciens strain X030]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFQLEAPARD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=323136 FGE23_RS17990 WP_146277245.1 3632261..3633265(-) (ruvB) [Bacillus amyloliquefaciens strain X030]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGTCCCGCCATCGAAAGACCGGGAGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCGATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCGACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGGGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAGAAGCTCCGGCTCTGGAGATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAATCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTCCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCAATTGGAGGCGCCCGCCCGTGACTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-327)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

92.216

100

0.922
  ruvB Streptococcus pneumoniae R6

60.736

97.605

0.593
  ruvB Streptococcus pneumoniae D39

60.736

97.605

0.593
  ruvB Streptococcus pneumoniae TIGR4

60.736

97.605

0.593
  ruvB Synechocystis sp. PCC 6803

58.359

98.503

0.575
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518

Multiple sequence alignment