Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MCHL_RS12205 Genome accession   NC_011757
Coordinates   2650362..2650931 (-) Length   189 a.a.
NCBI ID   WP_012253693.1    Uniprot ID   B7L0Y9
Organism   Methylorubrum extorquens CM4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2645362..2655931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCHL_RS12185 (Mchl_2514) - 2645503..2647605 (-) 2103 WP_244413527.1 TonB-dependent siderophore receptor -
  MCHL_RS12190 (Mchl_2515) panC 2648016..2648873 (-) 858 WP_015950914.1 pantoate--beta-alanine ligase -
  MCHL_RS12195 (Mchl_2516) - 2648948..2649307 (-) 360 WP_012253692.1 hypothetical protein -
  MCHL_RS12200 (Mchl_2517) - 2649380..2649985 (-) 606 WP_003603578.1 XRE family transcriptional regulator -
  MCHL_RS30190 - 2650081..2650266 (+) 186 WP_158020084.1 hypothetical protein -
  MCHL_RS12205 (Mchl_2518) ssb 2650362..2650931 (-) 570 WP_012253693.1 single-stranded DNA-binding protein Machinery gene
  MCHL_RS12210 (Mchl_2519) - 2651166..2652182 (-) 1017 WP_015950915.1 NADP-dependent oxidoreductase -
  MCHL_RS12215 (Mchl_2520) - 2652275..2652682 (+) 408 WP_015950916.1 DUF4174 domain-containing protein -
  MCHL_RS12220 (Mchl_2521) - 2652735..2653301 (-) 567 WP_012253696.1 hypothetical protein -
  MCHL_RS12225 (Mchl_2522) - 2653531..2654304 (+) 774 WP_015950917.1 phosphodiester glycosidase family protein -
  MCHL_RS12230 (Mchl_2523) - 2654470..2655588 (-) 1119 WP_012253698.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20100.87 Da        Isoelectric Point: 6.0203

>NTDB_id=32312 MCHL_RS12205 WP_012253693.1 2650362..2650931(-) (ssb) [Methylorubrum extorquens CM4]
MAGSVNKVILVGNLGRDPETRRLSSGDPVVNLRIATSESWKDKASGERKEKTEWHSVVIYNDNLAKVAEQYLRKGSKVYI
EGQLQTRKWTDQSGAEKYTTEVVLQRFRGEMTILDGRGGGGGGDFAGEDEGGGQISRGGDRGGDRGGDRGGRDDYGSSRS
GGGGGGGDRRPSSGGGAKPNYDLDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=32312 MCHL_RS12205 WP_012253693.1 2650362..2650931(-) (ssb) [Methylorubrum extorquens CM4]
ATGGCGGGCAGCGTCAATAAGGTGATTCTGGTCGGCAATCTCGGGCGCGATCCCGAGACCCGGCGTCTGTCCTCGGGCGA
CCCCGTGGTGAACCTGCGCATCGCGACGTCGGAGTCCTGGAAGGACAAGGCGTCGGGCGAGCGCAAGGAAAAAACCGAGT
GGCACTCGGTCGTGATCTACAACGACAACCTCGCCAAGGTGGCGGAGCAGTATCTGCGCAAGGGCTCGAAGGTCTACATC
GAGGGCCAGCTTCAGACCCGCAAGTGGACCGACCAATCCGGCGCGGAGAAGTACACCACCGAAGTGGTGCTCCAGCGCTT
CCGCGGCGAGATGACGATTCTCGACGGCCGTGGCGGCGGTGGCGGCGGCGACTTCGCGGGCGAGGACGAGGGTGGCGGCC
AGATCAGCCGCGGCGGCGACCGGGGTGGTGATCGCGGCGGCGACCGCGGTGGGCGCGACGATTACGGCTCGAGCCGCTCC
GGTGGCGGTGGTGGCGGCGGCGATCGCCGGCCCTCCTCAGGCGGCGGCGCCAAGCCGAACTACGACCTCGACGACGACAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L0Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.179

100

0.487
  ssb Vibrio cholerae strain A1552

48.649

97.884

0.476
  ssb Neisseria gonorrhoeae MS11

41.398

98.413

0.407
  ssb Neisseria meningitidis MC58

40.86

98.413

0.402

Multiple sequence alignment