Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   SMI_RS06925 Genome accession   NC_013853
Coordinates   1370778..1371566 (+) Length   262 a.a.
NCBI ID   WP_000090697.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1365778..1376566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS06910 (smi_1362) - 1367253..1368176 (-) 924 WP_000756234.1 hypothetical protein -
  SMI_RS06920 - 1368812..1370160 (+) 1349 WP_164925562.1 IS3 family transposase -
  SMI_RS10945 - 1370170..1370304 (-) 135 WP_001003832.1 hypothetical protein -
  SMI_RS10575 (smi_1366) - 1370475..1370618 (-) 144 WP_000969965.1 hypothetical protein -
  SMI_RS06925 (smi_1367) irvR 1370778..1371566 (+) 789 WP_000090697.1 S24 family peptidase Regulator
  SMI_RS06930 (smi_1368) - 1371580..1372662 (+) 1083 WP_000432060.1 hypothetical protein -
  SMI_RS10815 - 1373111..1373362 (+) 252 WP_000671972.1 type II toxin-antitoxin system PemK/MazF family toxin -
  SMI_RS06940 (smi_1371) - 1373773..1374369 (+) 597 WP_001001539.1 CD20-like domain-containing protein -
  SMI_RS06945 (smi_1372) - 1374662..1375744 (+) 1083 Protein_1338 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29242.74 Da        Isoelectric Point: 4.4240

>NTDB_id=32312 SMI_RS06925 WP_000090697.1 1370778..1371566(+) (irvR) [Streptococcus mitis B6]
MARGRGKLTPQDKEDMKVFSANLNAILSDRNCKQVELSRATGIPASTLTGYVKGTSLPIPGNVQKIADHFGVLKSTLDPR
FASEDSSIEITPTASQIQSIYDQLAPPRQGKVLTYAERQLDEQKNEDKTKINEVSEKIVQLYGYDYYDHAASAGTGQYLN
DIRVERIELPVDVDADFVIPIKGDSMEPDYHDGDLVFIQTSVDLNDGVIGVFNYNGEAYIKQLVIDTEQSYLHSLNPAYK
DMPITPETDFRIIGEVVDLYRN

Nucleotide


Download         Length: 789 bp        

>NTDB_id=32312 SMI_RS06925 WP_000090697.1 1370778..1371566(+) (irvR) [Streptococcus mitis B6]
ATGGCCAGAGGACGAGGAAAATTAACTCCTCAAGATAAAGAGGATATGAAGGTCTTTTCCGCAAATCTAAATGCTATTTT
GTCGGATAGGAATTGTAAGCAAGTTGAATTGTCCAGAGCGACAGGTATACCTGCTAGCACTTTAACGGGCTATGTAAAAG
GAACTTCTTTGCCTATACCTGGTAATGTACAAAAAATAGCTGATCATTTTGGAGTATTAAAATCGACTTTAGATCCGAGG
TTTGCAAGTGAAGATTCATCTATTGAAATTACTCCTACCGCTTCCCAAATCCAATCAATCTACGACCAACTAGCACCGCC
TAGACAAGGCAAAGTCCTAACCTATGCCGAGAGGCAACTAGACGAGCAAAAAAATGAAGATAAAACGAAGATAAACGAAG
TATCAGAGAAAATTGTTCAACTCTATGGTTACGACTACTACGACCACGCTGCTTCTGCTGGTACTGGGCAGTATTTGAAT
GATATACGAGTGGAACGGATTGAGTTGCCAGTGGATGTTGATGCCGACTTTGTTATTCCGATTAAAGGTGACTCCATGGA
ACCTGATTATCATGATGGCGACCTAGTATTTATCCAGACAAGTGTTGATTTGAATGATGGTGTTATCGGAGTGTTTAACT
ACAACGGAGAGGCATATATCAAGCAACTAGTCATTGATACAGAACAATCCTACCTACATAGCTTGAATCCTGCATACAAG
GATATGCCAATCACACCAGAAACAGACTTCCGAATCATTGGAGAAGTCGTGGATTTATATAGGAATTAA

Domains

Predicted by InterProScan.

Cro/C1-type HTH DNA-binding domain (HTH_26)

(22-72)

Peptidase S24-like (Peptidase_S24)

(150-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

35.117

100

0.401

Multiple sequence alignment