Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   EB817_RS01710 Genome accession   NZ_CP033336
Coordinates   308462..309148 (+) Length   228 a.a.
NCBI ID   WP_002991052.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY165     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 303462..314148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB817_RS01685 (EB817_01685) ktrB 303604..304980 (-) 1377 WP_023605004.1 potassium uptake transporter channel subunit KtrB -
  EB817_RS01690 (EB817_01690) rsmG 305065..305778 (-) 714 WP_129304463.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  EB817_RS01695 (EB817_01695) - 305928..306485 (+) 558 WP_129304465.1 LemA family protein -
  EB817_RS01700 (EB817_01700) htpX 306532..307428 (+) 897 WP_002985953.1 zinc metalloprotease HtpX -
  EB817_RS01705 (EB817_01705) - 307662..308195 (+) 534 WP_011054200.1 DUF177 domain-containing protein -
  EB817_RS01710 (EB817_01710) covR 308462..309148 (+) 687 WP_002991052.1 two-component system response regulator CovR Regulator
  EB817_RS01715 (EB817_01715) covS 309154..310656 (+) 1503 WP_002991036.1 two-component system sensor histidine kinase CovS -
  EB817_RS01720 (EB817_01720) - 310890..312023 (+) 1134 WP_022554244.1 ISAs1-like element IS1548 family transposase -
  EB817_RS01725 (EB817_01730) nrdR 312197..312691 (+) 495 WP_002985941.1 transcriptional regulator NrdR -
  EB817_RS01730 (EB817_01735) - 312675..313850 (+) 1176 WP_009880401.1 replication initiation and membrane attachment family protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26618.70 Da        Isoelectric Point: 4.6586

>NTDB_id=323065 EB817_RS01710 WP_002991052.1 308462..309148(+) (covR) [Streptococcus pyogenes strain TSPY165]
MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=323065 EB817_RS01710 WP_002991052.1 308462..309148(+) (covR) [Streptococcus pyogenes strain TSPY165]
ATGACAAAGAAAATTTTAATTATTGAAGATGAAAAGAATCTGGCTAGATTCGTTTCTCTTGAGCTGCAACATGAGGGTTA
TGAAGTCATTGTTGAGGTCAATGGTCGTGAAGGGTTAGAAACTGCTTTGGAAAAAGAGTTTGATTTAATCCTGCTTGACT
TAATGTTACCAGAGATGGATGGTTTTGAAGTGACCCGTCGTTTGCAAACCGAAAAAACAACGTATATCATGATGATGACT
GCGCGTGATTCTATTATGGATGTGGTTGCAGGTTTAGACCGCGGTGCAGACGACTATATTGTTAAACCGTTTGCCATTGA
AGAACTACTTGCCCGTATTCGTGCTATTTTCCGCCGTCAAGATATTGAATCTGAGAAGAAAGTGCCTAGTCAAGGTATTT
ATCGAGATCTAGTTTTAAATCCACAAAACCGTTCAGTTAATCGTGGCGACGATGAGATTTCTCTCACTAAACGTGAATAT
GATTTGCTTAATATTTTGATGACTAATATGAATCGTGTCATGACACGTGAAGAATTATTGTCAAATGTTTGGAAATATGA
TGAAGCCGTTGAGACTAATGTTGTAGATGTCTATATTCGTTATCTCCGCGGCAAAATTGACATTCCAGGCAAGGAATCTT
ATATCCAAACAGTGCGTGGCATGGGATACGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.966

100

0.447
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425

Multiple sequence alignment