Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FGE23_RS08945 Genome accession   NZ_CP040672
Coordinates   1752169..1752885 (+) Length   238 a.a.
NCBI ID   WP_146276334.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1747169..1757885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS08915 - 1747347..1747724 (+) 378 WP_003155597.1 DUF1992 domain-containing protein -
  FGE23_RS08920 - 1747734..1748165 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  FGE23_RS08925 - 1748181..1748423 (-) 243 WP_003155595.1 spore germination protein -
  FGE23_RS08930 - 1748438..1748698 (-) 261 WP_007408496.1 spore germination protein -
  FGE23_RS08935 treP 1748969..1750384 (+) 1416 WP_146276330.1 PTS system trehalose-specific EIIBC component -
  FGE23_RS08940 treC 1750460..1752145 (+) 1686 WP_146276332.1 alpha,alpha-phosphotrehalase -
  FGE23_RS08945 treR 1752169..1752885 (+) 717 WP_146276334.1 trehalose operon repressor Regulator
  FGE23_RS08950 - 1753019..1753684 (+) 666 WP_031378881.1 NAD(P)H-dependent oxidoreductase -
  FGE23_RS08955 - 1753727..1754482 (-) 756 WP_146276336.1 YibE/F family protein -
  FGE23_RS08960 - 1754479..1755618 (-) 1140 WP_146276338.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27527.48 Da        Isoelectric Point: 6.9762

>NTDB_id=323059 FGE23_RS08945 WP_146276334.1 1752169..1752885(+) (treR) [Bacillus amyloliquefaciens strain X030]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPQLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=323059 FGE23_RS08945 WP_146276334.1 1752169..1752885(+) (treR) [Bacillus amyloliquefaciens strain X030]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTCGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCAGTCTCAGGC
CTGATCAGCTTCAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCAATTGACGAAGGCGATTTGCGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTCCAATATACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424

Multiple sequence alignment